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• 3D Protein Structure Predicted from Sequence
  The evolutionary trajectory of a protein through sequence space is constrained by function and three-dimensional (3D) structure. Residues in spatial proximity tend to co-evolve, yet attempts to invert the evolutionary record to identify these constraints and u…
  arxiv Debora S. Marks, Lucy J. Colwell, Robert Sheridan, Thomas A. Hopf 等 2011-10-23T22:02:12Z 置信度 0.78 q-bio.BMcs.CEphysics.bio-phphysics.data-an
• A Combined Deep Learning-Gradient Boosting Machine Framework for Fluid Intelligence Prediction
  The ABCD Neurocognitive Prediction Challenge is a community driven competition asking competitors to develop algorithms to predict fluid intelligence score from T1-w MRIs. In this work, we propose a deep learning combined with gradient boosting machine framewo…
  arxiv Yeeleng S. Vang, Yingxin Cao, Xiaohui Xie 2019-10-16T22:32:13Z 置信度 0.78 cs.CVq-bio.NC
• Protein structure prediction as a hard optimization problem: the genetic algorithm approach
  Protein structure prediction can be shown to be an NP-hard problem; the number of conformations grows exponentially with the number of residues. The native conformations of proteins occupy a very small subset of these, hence an exploratory, robust search algor…
  arxiv Mehul M. Khimasia, Peter V. Coveney 1997-08-11T10:33:15Z 置信度 0.78 physics.chem-ph
• Protein Language Models and Structure Prediction: Connection and Progression
  The prediction of protein structures from sequences is an important task for function prediction, drug design, and related biological processes understanding. Recent advances have proved the power of language models (LMs) in processing the protein sequence dat…
  arxiv Bozhen Hu, Jun Xia, Jiangbin Zheng, Cheng Tan 等 2022-11-30T04:58:54Z 置信度 0.78 q-bio.QMcs.AIcs.LG
• Beating the Best: Improving on AlphaFold2 at Protein Structure Prediction
  The goal of Protein Structure Prediction (PSP) problem is to predict a protein's 3D structure (confirmation) from its amino acid sequence. The problem has been a 'holy grail' of science since the Noble prize-winning work of Anfinsen demonstrated that protein c…
  arxiv Abbi Abdel-Rehim, Oghenejokpeme Orhobor, Hang Lou, Hao Ni 等 2023-01-18T14:39:34Z 置信度 0.78 q-bio.BMcs.LG
• idMotif: An Interactive Motif Identification in Protein Sequences
  This article introduces idMotif, a visual analytics framework designed to aid domain experts in the identification of motifs within protein sequences. Motifs, short sequences of amino acids, are critical for understanding the distinct functions of proteins. Id…
  arxiv Ji Hwan Park, Vikash Prasad, Sydney Newsom, Fares Najar 等 2024-02-04T06:51:03Z 置信度 0.78 q-bio.QMcs.GRcs.HCcs.LG
• HMACA: Towards Proposing a Cellular Automata Based Tool for Protein Coding, Promoter Region Identification and Protein Structure Prediction
  Human body consists of lot of cells, each cell consist of DeOxaRibo Nucleic Acid (DNA). Identifying the genes from the DNA sequences is a very difficult task. But identifying the coding regions is more complex task compared to the former. Identifying the prote…
  arxiv Pokkuluri Kiran Sree, Inampudi Ramesh Babu, SSSN Usha Devi N 2014-01-21T16:15:29Z 置信度 0.78 cs.CEcs.LG
• MUFold-SS: Protein Secondary Structure Prediction Using Deep Inception-Inside-Inception Networks
  Motivation: Protein secondary structure prediction can provide important information for protein 3D structure prediction and protein functions. Deep learning, which has been successfully applied to various research fields such as image classification and voice…
  arxiv Chao Fang, Yi Shang, Dong Xu 2017-09-12T20:59:27Z 置信度 0.78 q-bio.QMcs.CVcs.NE
• A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm
  We present a novel method that predicts transmembrane domains in proteins using solely information contained in the sequence itself. The PRED-TMR algorithm described, refines a standard hydrophobicity analysis with a detection of potential termini ('edges', st…
  arxiv Claude Pasquier, Vasilis Promponas, Giorgos Palaios, Ioannis Hamodrakas 等 2009-02-18T13:23:03Z 置信度 0.78 q-bio.QM
• A Dirichlet process mixture of hidden Markov models for protein structure prediction
  By providing new insights into the distribution of a protein's torsion angles, recent statistical models for this data have pointed the way to more efficient methods for protein structure prediction. Most current approaches have concentrated on bivariate model…
  arxiv Kristin P. Lennox, David B. Dahl, Marina Vannucci, Ryan Day 等 2010-11-09T12:43:57Z 置信度 0.78 stat.AP
• Advanced Deep Learning Methods for Protein Structure Prediction and Design
  After AlphaFold won the Nobel Prize, protein prediction with deep learning once again became a hot topic. We comprehensively explore advanced deep learning methods applied to protein structure prediction and design. It begins by examining recent innovations in…
  arxiv Yichao Zhang, Ningyuan Deng, Xinyuan Song, Ziqian Bi 等 2025-03-14T21:28:29Z 置信度 0.78 q-bio.BMcs.AIcs.LG
• Protein secondary structure prediction using deep convolutional neural fields
  Protein secondary structure (SS) prediction is important for studying protein structure and function. When only the sequence (profile) information is used as input feature, currently the best predictors can obtain ~80% Q3 accuracy, which has not been improved …
  arxiv Sheng Wang, Jian Peng, Jianzhu Ma, Jinbo Xu 2015-12-02T01:53:57Z 置信度 0.78 q-bio.BMcs.LGq-bio.QM
• In silico prediction of protein flexibility with local structure approach
  Flexibility is an intrinsic essential feature of protein structures, directly linked to their functions. To this day, most of the prediction methods use the crystallographic data (namely B-factors) as the only indicator of protein's inner flexibility and predi…
  arxiv Tarun Narwani, Catherine Etchebest, Pierrick Craveur, Sylvain Léonard 等 2019-08-14T13:40:51Z 置信度 0.78 q-bio.QMq-bio.BM
• Deep Supervised and Convolutional Generative Stochastic Network for Protein Secondary Structure Prediction
  Predicting protein secondary structure is a fundamental problem in protein structure prediction. Here we present a new supervised generative stochastic network (GSN) based method to predict local secondary structure with deep hierarchical representations. GSN …
  arxiv Jian Zhou, Olga G. Troyanskaya 2014-03-06T05:18:26Z 置信度 0.78 q-bio.QMcs.CEcs.LG
• CrysFormer: Protein Structure Prediction via 3d Patterson Maps and Partial Structure Attention
  Determining the structure of a protein has been a decades-long open question. A protein's three-dimensional structure often poses nontrivial computation costs, when classical simulation algorithms are utilized. Advances in the transformer neural network archit…
  arxiv Chen Dun, Qiutai Pan, Shikai Jin, Ria Stevens 等 2023-10-05T21:10:22Z 置信度 0.78 cs.LG
• EigenFold: Generative Protein Structure Prediction with Diffusion Models
  Protein structure prediction has reached revolutionary levels of accuracy on single structures, yet distributional modeling paradigms are needed to capture the conformational ensembles and flexibility that underlie biological function. Towards this goal, we de…
  arxiv Bowen Jing, Ezra Erives, Peter Pao-Huang, Gabriele Corso 等 2023-04-05T02:46:13Z 置信度 0.78 q-bio.BMcs.LGphysics.bio-ph
• Protein secondary structure: Entropy, correlations and prediction
  Is protein secondary structure primarily determined by local interactions between residues closely spaced along the amino acid backbone, or by non-local tertiary interactions? To answer this question we have measured the entropy densities of primary structure …
  arxiv Gavin E. Crooks, Steven E. Brenner 2003-10-29T06:48:11Z 置信度 0.78 q-bio.BM
• MAS2HP: A Multi Agent System to Predict Protein Structure in 2D HP model
  Protein Structure Prediction (PSP) is an unsolved problem in the field of computational biology. The problem of protein structure prediction is about predicting the native conformation of a protein, while its sequence of amino acids is known. Regarding process…
  arxiv Hossein Parineh, Nasser Mozayani 2022-05-11T05:17:47Z 置信度 0.78 q-bio.BMcs.AI
• Prediction of protein secondary structure based on residue pairs
  The GOR program for predicting protein secondary structure is extended to include triple correlation. A score system for a residue pair to be at certain conformation state is derived from the conditional weight matrix describing amino acid frequencies at each …
  arxiv Xin Liu, Li-mei Zhang, Wei-Mou Zheng 2002-12-18T11:07:47Z 置信度 0.78 physics.bio-phq-bio
• DISPROTBENCH: Uncovering the Functional Limits of Protein Structure Prediction Models in Intrinsically Disordered Regions
  Intrinsically disordered regions (IDRs) play central roles in cellular function, yet remain poorly evaluated by existing protein structure prediction benchmarks. Current evaluations largely focus on well-folded domains, overlooking three fundamental challenges…
  arxiv Xinyue Zeng, Tuo Wang, Adithya Kulkarni, Alexander Lu 等 2025-06-18T23:58:22Z 置信度 0.78 q-bio.BMcs.LG
• Efficient Quantum Protein Structure Prediction with Problem-Agnostic Ansatzes
  Accurately predicting protein structures from amino acid sequences remains a fundamental challenge in computational biology, with profound implications for understanding biological functions and enabling structure-based drug discovery. Quantum computing approa…
  arxiv Hanna Linn, Rui-Hao Li, Alexander Holden, Abdullah Ash Saki 等 2025-09-22T18:00:07Z 置信度 0.78 quant-ph
• Jeeva: Enterprise Grid-enabled Web Portal for Protein Secondary Structure Prediction
  This paper presents a Grid portal for protein secondary structure prediction developed by using services of Aneka, a .NET-based enterprise Grid technology. The portal is used by research scientists to discover new prediction structures in a parallel manner. An…
  arxiv Chao Jin, Jayavardhana Gubbi, Rajkumar Buyya, Marimuthu Palaniswami 2009-03-08T04:50:53Z 置信度 0.78 cs.DC
• 2010/06/08: Protein Prediction: lecture 11: Protein Structure Prediction CM: Burkhard Rost
  crossref 2010-06-11T20:15:32Z 置信度 0.70
• 20110517 - Protein Prediction I - Protein Structure - Burkhard Rost
  crossref 2011-05-20T07:39:46Z 置信度 0.70
• A Practical Guide to Protein Structure Prediction
  The protein-folding problem is one of the greatest remaining challenges in structural molecular biology (if not the whole of biology). How do proteins translate from their primary structure (sequence) to tertiary structure? How is the information encoded? Basi…
  crossref David T. Jones 2003-11-15T01:38:03Z 置信度 0.70
• Protein Structure Prediction Using Threading
  crossref Jinbo Xu, Feng Jiao, Libo Yu 2007-12-08T13:23:36Z 置信度 0.70
• Use of Class Prediction to Improve Protein Secondary Structure Prediction
  crossref Gilbert Deléage, Bernard Roux 2011-10-01T04:40:23Z 置信度 0.70
• Protein Structure Prediction
  crossref 2011-08-24T07:02:43Z 置信度 0.70
• Protein structure prediction with evolutionary algorithm
  Three-dimensional protein structure prediction is one of the fundamental problems of Structural Bioinformatics. The use of problem information through fragment insertion, secondary structure, and contact maps can help explore the search space better. An evolut…
  europepmc 2024-09-28T17:40:17Z 置信度 0.80
• Protein structure prediction—principles and approaches
  Abstract Anyone who examines the atomic structure of even the smallest globular protein cannot but marvel at the convoluted path of the polypeptide main chain and the complex packing arrangements of main and side chain atoms. Surely then it must be a misguided…
  crossref Michael J E Sternberg 2023-11-03T20:06:06Z 置信度 0.70
• 20110621 - Protein Prediction 1 - Protein Structure - Burkhard Rost
  crossref 2011-07-04T14:01:05Z 置信度 0.70
• 20110524 - Protein Prediction 1 - Protein Structure - Burkhard Rost
  crossref 2011-05-31T13:34:27Z 置信度 0.70
• Toward Quantitative Protein Structure Prediction
  We review a constrained optimization strategy known as the antlion method for the purpose of protein structure prediction. This method involves the use of neural network predictions of secondary and tertiary structure to systematically deform a protein energy …
  crossref Teresa Head-Gordon 2012-03-28T11:07:11Z 置信度 0.70
• Scoring Functions for ab initio Protein Structure Prediction
  The native conformation of a protein is generally assumed to be the one with the lowest free energy ( 1 ). The successful prediction of protein structure depends on the surmounting of three subproblems: (1) choosing a representation of protein conformation tha…
  crossref Enoch S. Huang, Ram Samudrala, Britt H. Park 2003-11-15T01:38:03Z 置信度 0.70
• The Development of the Prediction of Protein Structure
  crossref Gerald D. Fasman 2011-10-01T04:40:23Z 置信度 0.70
• 20110526 - Protein Prediction 1 - Protein Structure - Burkhard Rost
  crossref 2011-06-01T17:41:34Z 置信度 0.70
• Protein Structure Prediction by Protein Threading
  The seminal work of Bowie, Lüthy, and Eisenberg (Bowie et al., 1991) on “the inverse protein folding problem” laid the foundation of protein structure prediction by protein threading. By using simple measures for fitness of different amino acid types to local …
  crossref Ying Xu, Zhijie Liu, Liming Cai, Dong Xu 2010-05-01T07:58:37Z 置信度 0.70
• 20110519 - Protein Prediction I - Protein Structure - Burkhard Rost
  crossref 2011-05-20T11:42:03Z 置信度 0.70
• Protein Structure Comparison Using SAP
  In contrast to DNA, proteins exhibit an apparently unlimited variety of structure. This is a necessary requirement of the vast array of differing functions that they perform in the maintainance of life, again, in contrast to the relatively static archival func…
  crossref William R. Taylor 2003-11-14T20:38:03Z 置信度 0.70
• Review for "Protein structure search to support the development of protein structure prediction methods"
  crossref 2021-01-18T20:18:22Z 置信度 0.70
• 2010/05/28: Protein Prediction: lecture 09: Protein Structure: Burkhard Rost
  crossref Burkhard Rost 2010-05-28T16:47:49Z 置信度 0.70
• Structure Prediction for Membrane Proteins
  crossref Fritz Jähnig 2011-10-01T00:40:23Z 置信度 0.70
• 20110628 - Protein Prediction 1 - Protein Structure - Andrea Schafferhans
  crossref 2011-07-04T10:25:09Z 置信度 0.70
• 20110630 - Protein Prediction 1 - Protein Structure - Marc Offman
  crossref 2011-07-05T10:24:18Z 置信度 0.70
• 20110607 - Protein Prediction 1 - Protein Structure - Burkhard Rost
  crossref 2011-06-17T13:47:52Z 置信度 0.70
• Protein Structure Prediction
  This chapter presents experimental and computational approaches to determining protein structures, focusing on secondary and tertiary levels. It describes how researchers use X-ray crystallography, NMR spectroscopy, and cryo-electron microscopy to reveal molec…
  crossref Jamil Momand, Eliot Bush 2026-03-27T12:57:17Z 置信度 0.70
• Tertiary Structure Prediction
  crossref Fred E. Cohen, Irwin D. Kuntz 2011-10-01T04:40:23Z 置信度 0.70
• Prediction of Packing of Secondary Structure
  crossref Kozo Nagano 2011-10-01T04:40:23Z 置信度 0.70
• The Assessment of Methods for Protein Structure Prediction
  Methods for protein structure prediction are flourishing and becoming widely available to both experimentalists and computational biologists. But, how good are they? What is their range of applicability and how can we know which method is better suited for the…
  crossref Anna Tramontano, Domenico Cozzetto, Alejandro Giorgetti, Domenico Raimondo 2007-12-08T18:23:36Z 置信度 0.70
• Protein Prediction - Protein Prediction - Introduction to Proteins
  crossref Marco Punta, Burkhard Rost 2010-04-28T05:07:13Z 置信度 0.70
• Protein Loop Structure Prediction Methods
  crossref 2012-01-20T08:14:36Z 置信度 0.70
• A Historical Perspective of Template-Based Protein Structure Prediction
  This chapter presents a broad and a historical overview of the problem of protein structure prediction. Different structure prediction methods, including homology modeling, fold recognition (FR)/protein threading, ab initio/de novo approaches, and hybrid techn…
  crossref Jun-tao Guo, Kyle Ellrott, Ying Xu 2008-01-10T06:13:01Z 置信度 0.70
• Structure-based prediction of protein-protein interaction sites
  Protein-protein interactions play a central role in the formation of protein complexes and the biological pathways that orchestrate virtually all cellular processes. Reliable identification of the specific amino acid residues that form the interface of a prote…
  crossref Rafael Armando Jordan 2018-08-10T15:38:52Z 置信度 0.70
• Table S1: EDC protein secondary structure prediction
  crossref 2022-02-28T03:45:46Z 置信度 0.70
• Introduction to Protein Structure Prediction
  This chapter contains sections titled: Introduction to Protein Structures Protein Structure Prediction Methods References
  crossref Huzefa Rangwala, George Karypis 2011-06-25T14:40:03Z 置信度 0.70
• Prediction of secondary structure
  Abstract The prediction of protein secondary structure is a major part of the general protein folding problem and is the most general method of obtaining some structural information from any newly-determined sequence. Secondary structure prediction is useful i…
  crossref Ross D King 2023-11-03T20:06:06Z 置信度 0.70
• Genetic Algorithms for Protein Structure Prediction
  crossref 2012-01-20T13:14:36Z 置信度 0.70
• Revolutionizing structural biology: AI-driven protein structure prediction from AlphaFold to next-generation innovations
  Protein structure modeling from the prediction algorithm has become a valuable tool in biology and medicine with computational advances. Accurate protein structure prediction is critical in druglike compound discovery, disease mechanism understanding, and prot…
  europepmc 2025 置信度 0.80
• Scoring Functions for De Novo Protein Structure Prediction Revisited
  crossref Shing-Chung Ngan, Ling-Hong Hung, Tianyun Liu, Ram Samudrala 2007-12-08T18:23:36Z 置信度 0.70
• Prediction of transmembrane protein topology
  Abstract Membrane proteins fulfil many critical cellular functions, and make up a large fraction of all proteins. In fact, it has recently been estimated that as many as 35–-40% of all yeast genes may code for integral membrane proteins (1,2). Yet, only a hand…
  crossref Gunnar Von Heijne 2023-11-03T20:06:06Z 置信度 0.70
• Structure-based Prediction of Protein-protein Interaction Networks across Proteomes
  Protein-protein interactions (PPIs) orchestrate virtually all cellular processes, therefore, their exhaustive exploration is essential for the comprehensive understanding of cellular networks. Significant efforts have been devoted to expand the coverage of the…
  crossref Surabhi Maheshwari 2022-06-10T17:40:01Z 置信度 0.70
• The Genetic Algorithm and Protein Tertiary Structure Prediction
  In 1959, Anfinsen demonstrated that the primary structure (the sequence of amino acids) of a protein can uniquely determine its tertiary structure (three dimensional conformation). This implied that there must be a consistent set of rules for deriving a protei…
  crossref Scott M. Le Grand, Kenneth M. Merz 2012-03-28T11:07:11Z 置信度 0.70
• Evolution-aware protein structure comparison and applications in protein-protein interaction prediction
  Comparison of protein structures provide insights into the function and interactions of proteins and enhance our understanding of biomolecular mechanisms driving life and disease. Available protein structure comparison methods are based solely on the 3D geomet…
  crossref Chunyu Zhao, Ahmet Sacan 2021-07-16T02:27:47Z 置信度 0.70
• Protein structure search to support the development of protein structure prediction methods
  Abstract Protein structure prediction is a long-standing unsolved problem in molecular biology that has seen renewed interest with the recent success of deep learning with AlphaFold at CASP13. While developing and evaluating protein structure prediction method…
  preprints Ronald Ayoub, Yugyung Lee 2020 置信度 0.74
• Protein structure prediction and conformational transitions
  There is a critical need for protein structure and function prediction. Accurate protein secondary structure prediction is essential for many bioinformatics applications, including protein tertiary structure prediction. We developed an algorithm (Fragment Data…
  crossref Haitao Cheng 2018-08-10T19:38:27Z 置信度 0.70
• Hidden Markov Models for Prediction of Protein Features
  crossref Christopher Bystroff, Anders Krogh 2007-12-08T18:23:36Z 置信度 0.70
• Figure 6: Structure prediction of the MYB1R1 protein.
  crossref 2025-09-04T08:22:53Z 置信度 0.70
• AB INITIO PROTEIN STRUCTURE PREDICTION ALGORITHMS
  Genes that encode novel proteins are constantly being discovered and added to databases, but the speed with which their structures are being determined is not keeping up with this rate of discovery. Currently, homology and threading methods perform the best fo…
  crossref Maciej Kicinski 2019-04-18T13:34:00Z 置信度 0.70
• Fast learning optimized prediction methodology for protein secondary structure prediction, relative solvent accessibility prediction and phosphorylation prediction
  Computational methods are rapidly gaining importance in the field of structural biology, mostly due to the explosive progress in genome sequencing projects and the large disparity between the number of sequences and the number of structures. There has been an …
  crossref Saraswathi Sundararajan 2018-08-10T15:38:27Z 置信度 0.70
• Figure 7: Protein structure prediction and phylogenetic analysis.
  crossref 2016-09-15T03:49:55Z 置信度 0.70
• Protein Structure Prediction
  The number of protein sequences grows each year, yet the number of structures deposited in the Protein Data Bank remains relatively small. The importance of protein structure prediction cannot be over
  crossref David Webster 2003-11-14T20:38:03Z 置信度 0.70
• Classification of Protein Folds
  The classification of three-dimensional (3D) structures now plays a central role in understanding the principles of protein structure, function, and evolution. Classification of new structures can provide functional details through comparison to others, which …
  crossref Robert B. Russell 2003-11-15T01:38:03Z 置信度 0.70
• Tau protein structure and dynamics
  Alzheimer's disease (AD) is the most common type of dementia. It is characterized by chronic memory defects, alterations in behavior, and cognitive decline. AD is histopathologically characterized by two hallmarks: intracellular accumulation of Tau protein as …
  crossref 2024-09-20T16:25:14Z 置信度 0.70
• Decision letter for "Protein structure search to support the development of protein structure prediction methods"
  crossref 2021-01-18T20:18:22Z 置信度 0.70
• Protein Structure Prediction
  crossref M. Michael Gromiha 2011-05-21T12:09:45Z 置信度 0.70
• Tasser‐Based Protein Structure Prediction
  crossref Shashi Bhushan Pandit, Hongyi Zhou, Jeffrey Skolnick 2011-06-25T14:40:03Z 置信度 0.70
• Probabilistic graphical models for protein structure prediction
  Computationally predicting the folded and functional three-dimensional structure of a protein molecule from its amino acid sequence with high degree of accuracy is critically important in structural bioinformatics and has huge implications in understanding and…
  crossref Debswapna Bhattacharya 2018-11-14T00:55:08Z 置信度 0.70
• Author response for "Protein structure search to support the development of protein structure prediction methods"
  crossref Ronald Ayoub, Yugyung Lee 2021-01-18T20:18:22Z 置信度 0.70
• Computational Complexity, Protein Structure Prediction, and the Levinthal Paradox
  A protein molecule is a covalent chain of amino acid residues. Although it is topologically linear, in physiological conditions it folds into a unique (though flexible) three-dimensional structure. This structure, which has been determined by x-ray crystallogr…
  crossref J. Thomas Ngo, Joe Marks, Martin Karplus 2012-03-28T11:07:11Z 置信度 0.70
• Alpha Complexes in Protein Structure Prediction
  Reducing the computational effort and increasing the accuracy of potential energy functions is of utmost importance in modeling biological systems, for instance in protein structure prediction, docking or design. Evaluating interactions between nonbonded atoms…
  crossref Pawel Winter, Rasmus Fonseca 2015-02-02T09:54:58Z 置信度 0.70
• Template-Based Protein Structure Prediction
  crossref Junfeng HUANG, Peng DUAN, Wenyan WU 2011-09-09T11:36:51Z 置信度 0.70
• Species-specific protein secondary structure prediction
  lnternet, preter, distribuer et vendre des theses partout dans le monde, a des fins commerciales ou autres, sur support microforme, papier, electronique et/ou autres formats.
  crossref Mariana Barssoum 2018-10-04T20:15:19Z 置信度 0.70
• Computational protein structure prediction using deep learning
  Protein structure prediction is of great importance in bioinformatics and computational biology. Over the past 30 years, many machine learning methods have been developed for this problem in homology-based and ab-initio approaches. Recently, deep learning has …
  crossref Zhaoyu Li 2023-12-20T17:39:22Z 置信度 0.70
• Comparative Protein Structure Modeling: Introduction and Practical Examples with Modeller
  A useful three-dimensional (3D) model for a protein of unknown structure (the target) can frequently be built based on one or more related proteins of known structure (the templates). This is the aim of comparative or homology protein structure modeling. The n…
  crossref Roberto Sánchez, Andrej Šali 2003-11-14T20:38:03Z 置信度 0.70
• Infrastructure for Collaborative Protein Structure Prediction
  This project had an unusual form: it was designed to promote comparison and exchange of results within the protein structure prediction community.The main activities were centered around web sites and workshops, and the principle challenge was to involve as ma…
  crossref J. Moult 2007-04-09T22:46:56Z 置信度 0.70
• Protein Structure Prediction by Artificial Intelligence
  AI breakthroughs in protein prediction include AlphaFold and ESMFold. AlphaFold combines evolutionary sequence alignment with geometric reasoning through its Evoformer module, achieving atomic-level accuracy (0.96 Å backbone precision) via equivariant attentio…
  crossref 2025-10-06T23:31:09Z 置信度 0.70
• Genetic Algorithms and Protein Folding
  Genetic algorithms are, like neural networks, an example par excellence of an information-processing paradigm that was originally developed and exhibited by nature and later discovered by humans, who subsequently transformed the general principle into computat…
  crossref Steffen Schulze-Kremer 2003-11-15T01:38:03Z 置信度 0.70
• Virus Structure
  crossref Gerald Stubbs 2011-10-01T04:40:23Z 置信度 0.70
• The GOR Method of Protein Secondary Structure Prediction and Its Application as a Protein Aggregation Prediction Tool
  The GOR method of protein secondary structure prediction is described. The original method was published by Garnier, Osguthorpe, and Robson in 1978 and was one of the first successful methods to predict protein secondary structure from amino acid sequence. The…
  crossref Maksim Kouza, Eshel Faraggi, Andrzej Kolinski, Andrzej Kloczkowski 2016-10-27T08:21:44Z 置信度 0.70
• A novel framework for protein structure prediction
  The entire dissertation/thesis text is included in the research.pdf file; the official abstract appears in the short.pdf file (which also appears in the research.pdf); a non-technical general description, or public abstract, appears in the public.pdf file.
  crossref Rajkumar Bondugula 2018-11-14T00:55:08Z 置信度 0.70
• Figure 2: Prediction of secondary structure of RdRp protein.
  crossref 2020-07-03T04:12:45Z 置信度 0.70
• Review for "CASP16 Protein Monomer Structure Prediction Assessment"
  crossref 2025-10-01T00:06:13Z 置信度 0.70
• Membrane Protein Structure Prediction
  crossref Timothy Nugent, David T. Jones 2008-12-10T00:12:02Z 置信度 0.70
• Fragment based protein structure prediction. (c2013)
  crossref Meghrig Ohanes Terzian 2017-09-19T09:16:58Z 置信度 0.70
• Prediction of Protein-Protein Interaction Based on Structure
  A great challenge in the proteomics and structural genomics era is to predict protein structure and function from sequence, including the identification of biological partners. The development of a procedure to construct position-specific scoring matrices for …
  crossref Gregorio Fernandez-Ballester, Luis Serrano 2006-09-06T20:00:42Z 置信度 0.70
• Protein-protein interaction prediction via structure-based deep learning
  Abstract Protein-protein interactions (PPIs) play an essential role in life activities. Many machine learning algorithms based on protein sequence information have been developed to predict PPIs. However, these models have difficulty dealing with various seque…
  crossref Yucong Liu, Zhenhai Li 2023-05-30T12:55:16Z 置信度 0.70
• Protein Structure Prediction: Recent Successes and Failures
  crossref 2017-02-01T12:28:47Z 置信度 0.70
• Structure Prediction of Protein Complexes
  crossref Brian Pierce, Zhiping Weng 2010-05-01T07:58:37Z 置信度 0.70
• Relating Protein Structure and Function Through a Bijection and Its Implications on Protein Structure Prediction
  Proteins are studied by measuring different properties, typically the chemical structure and biochemical activity. Given that these measurements are done on the same protein molecule, they must be related. Despite the fact that this relationship exists, the ma…
  crossref Marco Ambriz-Rivas, Nina Pastor, Gabriel del 2012-04-03T14:16:10Z 置信度 0.70
• A Historical Perspective and Overview of Protein Structure Prediction
  crossref John C. Wooley, Yuzhen Ye 2007-08-24T08:51:05Z 置信度 0.70