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• Art perspectives on coevolution and biodiversity, the hybrid microbial-AI organisms of Codex Virtualis Genesis
  Codex Virtualis is an art-science research framework oriented towards the synthesis and evolution of an open-ended taxonomic collection of speculative forms of life. An aesthetic journey through an algorithmic ecosystem which seeks to enhance our understanding…
  crossref Alfredo Lozano, Leslie García, Paloma López, Emmanuel Anguiano 等 2022-07-20T23:17:38Z 置信度 0.70
• Synergizing Smart Farming and Human Bioinformatics Through IoT and Sensor Devices
  crossref Sandeep Kumar Jain, Pritesh Kumar Jain 2024-02-29T13:02:47Z 置信度 0.70
• Towards Deep Learning for Predicting Microbial Fuel Cell Energy Output
  Soil microbial fuel cells (SMFCs) are an emerging technology which offer clean and renewable energy in environments where more traditional power sources, such as chemical batteries or solar, are not suitable. With further development, SMFCs show great promise …
  crossref Adam Hess-Dunlop, Harshitha Kakani, Colleen Josephson 2024-08-28T18:26:30Z 置信度 0.70
• Guarding Maize: Vigilance Against Pathogens Early Identification, Detection, and Prevention
  crossref Khalil Ahmed, Mithilesh Kumar Dubey, Sudha Dubey 2024-02-29T13:02:47Z 置信度 0.70
• Enzyme and microbial technology
  crossref 2002-12-28T00:17:02Z 置信度 0.70
• Microbial induced nitrogen recycling in bio-geochemical decomposition sites
  Context: The sporadic introduction of deceased plant and animal matter into soils is pivotal in reincorporating organic carbon (C) and nitrogen (N) compounds into biogeochemical cycles. The breakdown of animal remains offers a rich reservoir of C and N, stimul…
  crossref Adrian John 2023-11-18T12:31:15Z 置信度 0.70
• Methods for rapid microbial detection
  crossref 2002-07-25T15:01:49Z 置信度 0.70
• Nonlinear impulsive system of microbial production in fed-batch culture and its optimal control
  crossref Caixia Gao, Yanhuai Lang, Enmin Feng, Zhilong Xiu 2008-08-09T12:21:13Z 置信度 0.70
• The Next Breakthrough in Microbial Fuel Cells and Microbial Electrolysis Cells for Bioenergy and Bioproducts
  Microbial Fuel Cells (MFCs) have demonstrated their capabilities under laboratory conditions to treat various types of wastewater with concomitant bioelectricity production. They can also be operated as Microbial Electrolysis Cells (MECs) with an external volt…
  crossref Minghua Zhou 2013-06-05T09:12:47Z 置信度 0.70
• AI-microbial hybrid biosensors: the next generation of intelligent detection systems.
  The convergence of artificial intelligence (AI) and microbial biosensor technology is transforming pathogen detection, environmental surveillance, antimicrobial resistance (AMR) profiling, and precision diagnostics. Microbial biosensors exploit the specificity…
  europepmc 2026 置信度 0.80
• Microbial dysbiosis and inferred functional profiling reveals the potential role of <i>Methylobacterium</i> in prostate cancer.
  Background and objective Prostate cancer (PCa) is a leading malignancy in men, with a multifactorial aetiology involving genetic, hormonal, and microbial factors. Although emerging evidence implicates tumour-associated microbial communities in cancer biology, …
  europepmc 2026 置信度 0.80
• Reconstructing community dynamics from limited observations.
  Background Ecosystems tend to fluctuate around stable equilibria in response to internal dynamics and environmental factors. Occasionally, they enter an unstable tipping region and collapse into an alternative stable state. Being able to quantify and predict t…
  europepmc 2026 置信度 0.80
• PlasChain: an algorithm for improving long plasmid reconstruction from metagenome assemblies
  Background Plasmids play a critical role in horizontal gene transfer and the spread of antibiotic resistance. However, recovering complete plasmid sequences from metagenomic samples remains highly challenging due to extensive repeat content, structural heterog…
  europepmc 2026 置信度 0.80
• The role of exogenous electron donors in steering microbial electrosynthesis of multi-carbon fatty acids from carbon dioxide.
  Microbial electrosynthesis (MES) enables CO 2 conversion to multi-carbon fatty acids, but selective upgrading to longer-chain products remains limited by inefficient electron supply. This study developed a sequential MES platform using short-chain alcohols (et…
  europepmc 2026 置信度 0.80
• Distributed majority consensus in synthetic microbial consortia with bursty gene expression.
  Engineering microbial consortia to perform robust population-level computations requires principled ways to achieve majority consensus in the presence of multiscale stochasticity. We develop a hybrid framework that couples time-varying intracellular gene-expre…
  europepmc 2026 置信度 0.80
• DivQuant: Estimation of Species Richness and Entropy from Small Samples
  Estimating diversity properties of discrete distributions from a small observed sample is a fundamental problem in algorithmic statistics that has applications in many fields, in particular bioinformatics, but also in ecology or linguistics. The two most commo…
  europepmc 2026 置信度 0.80
• Automated real-time feeding control for microbial electrolysis cell-anaerobic digestion systems using finite state machine.
  This study investigates the use of biosensor-led control in Microbial Electrolysis Cell-Anaerobic Digestion (MEC-AD) systems to enhance operational stability. Traditional methods depend on human operators to interpret data and adjust processes, whereas this re…
  europepmc 2026 置信度 0.80
• Microbial contributions to host life history trade-offs.
  All organisms must allocate finite resources among growth, maintenance, and reproduction, generating trade-offs that constrain adaptation. Host-associated microbiomes are dynamic resource engines capable of generating and reallocating energy and resources for …
  europepmc 2026 置信度 0.80
• Unveiling active microbial processes in Earth's deepest seawater.
  Microorganisms dominate life in the hadal zone, yet extreme sampling difficulty and low biomass have precluded characterization of their in situ activities. Here, we analyze microbiome samples collected from hadal seawaters via in situ filtration during 12 hum…
  europepmc 2026 置信度 0.80
• Comparative microbiome profiling of plant- and animal-derived traditional fermented foods from Mizoram, India using full-length 16S rRNA sequencing.
  Traditional fermented foods represent complex microbial ecosystems shaped by substrate composition, indigenous processing practices, and local environmental conditions. However, the microbiomes of many traditional fermented foods from Northeast India remain po…
  europepmc 2026 置信度 0.80
• Shotgun-NF: A reproducible Nextflow pipeline for end-to-end shotgun metagenomics analysis
  Abstract Shotgun metagenomics has become a central approach for characterising complex microbial communities, enabling simultaneous investigation of taxonomic composition, functional potential, genome-resolved diversity, and strain-level variation. However, an…
  europepmc 2026 置信度 0.80
• Atomistic simulations reveal the photoactivation mechanism of a carotenoid-binding photoreceptor.
  The orange carotenoid protein (OCP) is a key photoreceptor in the photoprotection of cyanobacterial antenna complexes. Its peculiar activity is governed by a bound keto-carotenoid that functions both as a light sensor and an energy quencher. Upon blue light ab…
  europepmc 2026 置信度 0.80
• Phages as Metabolic Switches in Plant-Associated Microbiomes: Implications for Climate-Smart Agriculture.
  Bacteriophages constitute a regulatory layer in plant-associated microbiomes that has been systematically under-characterized relative to their ecological importance. This review advances the hypothesis that phages function as metabolic switches, alternating b…
  europepmc 2026 置信度 0.80
• Two-stage microbial assembly and compact co-occurrence networks in encapsulated biofiller AAOA systems with low sludge yield.
  Previous long-term studies have reported low sludge yield and high nitrogen removal in encapsulated biofiller-based anaerobic/anoxic/oxic/anoxic systems (EB-AAOA), but the microbial ecology within individual reactor zones remains unclear. Biofiller-associated …
  europepmc 2026 置信度 0.80
• Enhancing the understanding of environmental microbiomes through topic modeling: a quantitative and qualitative analysis.
  Background Understanding ecosystem dynamics is essential for assessing ecosystem health, yet remains challenging due to complex biotic and abiotic interactions. Microbial communities are valuable indicators of environmental change, but the high dimensionality …
  europepmc 2026 置信度 0.80
• AI-nanotech synergies: recent advances in sustainable bio-manufacturing.
  Microbial fermentation plays a crucial role in industrial biotechnology, however, conventional and manual optimization methods often encounter challenges related to scalability and precision. Despite notable progress, a significant limitation in the current li…
  europepmc 2026 置信度 0.80
• Reliable detection of Host-Microbe Signatures in cancer using PRISM.
  Recent controversy in the cancer microbiome field highlights the need for more reliable microbial detection from human genomic data. Here, we develop PRISM, an efficient computational framework for precise microorganism identification and decontamination from …
  europepmc 2026 置信度 0.80
• DigestedProteinDB: A Compact and Scalable Key-Value Database for In Silico Peptide Digestion and Mass-Based Search.
  Efficient comparison of experimental peptide masses with theoretical values is a central step in mass spectrometry (MS)-based proteomics, microbial biotyping, and MS imaging. Such analyses increasingly require fast and scalable access to large collections of i…
  europepmc 2026 置信度 0.80
• Is <i>Fusobacterium nucleatum</i> the key mediator between oral infections and systemic diseases? Mechanistic insights and therapeutic implications.
  Fusobacterium nucleatum has emerged as a pathobiont that associates oral dysbiosis with systemic diseases through coaggregation, hematogenous dissemination, and immune modulation. This review provides molecular insights through which they are involved in syste…
  europepmc 2026 置信度 0.80
• A horizontal connectivity mode in coastal oceans: transport overrides stratification to govern microbiome network stability.
  Coastal ecosystems are critical biogeochemical reactors and biodiversity reservoirs, yet the mechanisms governing the community connectivity and stability of their foundational microbiomes remain poorly understood, particularly in anthropogenically influenced …
  europepmc 2026 置信度 0.80
• Correction: Preparation of starch/PVA/Cu-NPs bio-nanocomposites in packing as preservation of UF soft cheese.
  Authors and Affiliations Chemistry of Natural and Microbial Products Department, National Research Centre, 33 El Bohouth St. (former El Tahrir St.), Dokki, P.O. 12622, Giza, Egypt Heba A. El-Refai, Sanaa K. Gomaa & Rania A. Zaki Dairy Science Department, Natio…
  europepmc 2026 置信度 0.80
• PINPOINT: Protease INhibitor PredictiOn at the plant–pathogen INTerface using protein language models and structural modeling
  Summary Cysteine and serine proteases act as an immune hub in the plant apoplast to provide robust extracellular immunity during microbial colonisation. Microbial pathogens counteract these immune proteases by inhibiting their activity using small secreted pro…
  europepmc 2026 置信度 0.80
• MetaNet: a scalable and integrated tool for reproducible omics network analysis.
  Motivation Network analysis has become a central strategy for dissecting complex biological and environmental systems, particularly as modern omics technologies generate increasingly large and heterogeneous datasets. However, current tools often lack the scala…
  europepmc 2026 置信度 0.80
• Asymmetric architecture and adaptation of Treponema flagella.
  Spirochetes exhibit a distinctive corkscrew-like motility driven by periplasmic flagella that wrap around the cell body in a supercoiled configuration, yet the structural basis of this propulsion remains poorly understood. Here we combine cryo-electron microsc…
  europepmc 2026 置信度 0.80
• metaJAM: a Nextflow integrated metagenomic workflow for sedimentary ancient DNA
  The application of metagenomics in ancient DNA (aDNA) research is rapidly expanding, driven in particular by advances in sedimentary aDNA research and sequencing technologies. Although many ancient DNA studies rely on broadly similar bioinformatic strategies, …
  europepmc 2026 置信度 0.80
• Burden-aware feedback control of microbial consortia.
  Engineered microbial consortia are emerging as programmable systems capable of sensing and responding to their environment. However, maintaining defined community composition over time remains challenging, particularly in bioprocesses where growth conditions a…
  europepmc 2026 置信度 0.80
• Longitudinal wastewater metagenomics reveals distinct environmental and anthropogenic associations with resistance, virulence, and viral communities.
  Urban wastewater systems are reservoirs of antimicrobial resistance genes (ARGs) and virulence factor genes (VFGs), increasingly recognized as emerging environmental pollutants. However, longitudinal evidence linking tourism-related human mobility to its dynam…
  europepmc 2026 置信度 0.80
• 940 Nm Near-Infrared Photosynapses Based on Sn─Pb Perovskite for Efficient Face Recognition.
  Tin-lead perovskites offer great potentials for neuromorphic optoelectronics owing to their narrow bandgap and robust near-infrared (NIR) absorption. However, high-performance three-terminal artificial synapses based on these materials remain scarce due to cha…
  europepmc 2026 置信度 0.80
• Plastic Diets Drive Microbiome and Metabolic Reprogramming in Wax Moth Larvae (Achroia grisella).
  The burgeoning global plastic crisis necessitates transformative solutions beyond current recycling and disposal methods. This study investigates the ability of wax moth larvae (Achroia grisella) to biodegrade low-density polyethylene (LDPE) and polylactic aci…
  europepmc 2026 置信度 0.80
• Development of a mixed microbial culture for robust high-throughput ex-situ thermophilic biomethanation.
  Ex-situ biomethanation using mixed microbial cultures is a promising approach for carbon capture and utilisation, converting CO₂ and renewable H₂ into grid-compatible methane. However, achieving high H₂/CO₂ throughputs at ambient pressure remains constrained b…
  europepmc 2026 置信度 0.80
• Microbial named entity recognition and normalisation for AI-assisted literature review and meta-analysis.
  Motivation Manual curation of biomedical literature is slow and error-prone and while large language models trained on general texts have shown to be useful for text summarisation, these methods lack the domain-specific expertise required to perform this task …
  europepmc 2026 置信度 0.80
• Comparative genomics of herpes simplex virus 2 isolated from a maternal-neonatal dyad reveals high consensus sequence homology as well as minor variant diversity.
  Neonatal herpes simplex virus disease most often occurs following mother-to-neonate transmission during childbirth. However, genomic differences between the maternal and neonatal viral populations are poorly understood. Here, we performed deep whole-genome seq…
  europepmc 2026 置信度 0.80
• Abundance-activity decoupling in sulfur-cycling bacteria reflects viral infection types in meromictic lakes
  Meromictic lakes serve as analogs for redox-stratified ancient oceans with well-mixed surface waters and anoxic bottoms. Purple and green sulfur bacteria (PSB, GSB) dominate the anoxic zones where light penetrates, and their biosignatures can be used to guide …
  europepmc 2026 置信度 0.80
• Intelligent predictive biomechanics of intensely magnetized microbial penta-hybrid nano-blood in an electrified endoscopic ciliated artery.
  The integration of intelligent computing with multi-physics biomechanical models presents a paradigm shift in simulating highly non-linear and coupled systems. This research presents a predictive model for microbial transport in intensely magnetized penta-hybr…
  europepmc 2026 置信度 0.80
• DNA Data Storage Architecture via Ligation of Dynamic DNA Bytes.
  The explosive growth of digital data is overwhelming conventional storage media, creating an urgent need for more efficient solutions. DNA, with its ultra-high density and long-term stability, emerges as a promising medium; however, most current implementation…
  europepmc 2025 置信度 0.80
• Association between infant and toddler gut microbiota composition and later executive functioning.
  Background Studies indicate that alterations in gut microbiota composition (GMC) during the first 1,000 days of life are associated with neurodevelopment and further behavioral development. However, research on the associations between GMC and executive functi…
  europepmc 2026 置信度 0.80
• (+)-Majoranolide analogues from regioselective Baeyer-Villiger reactions mediated by hypervalent iodine(III) reagents.
  A series of enantiopure (+)-majoranolide analogues has been synthesized from the cellulose-derived chiral platform chemical (-)-Cyrene. The bicyclic ketone was substituted at C3 with a variety of benzylidene moieties via base-catalysed aldol condensations and …
  europepmc 2026 置信度 0.80
• Bioactive Solution-Blown Polycaprolactone/Gelatin Nanofibers Loaded with <i>Pistacia lentiscus</i> Essential Oil: Toward Sustainable and Functional Food Packaging.
  Polymer-based active packaging systems incorporating natural bioactive agents have attracted growing interest as eco-friendly alternatives to traditional food packaging materials. In this study, Pistacia lentiscus essential oil (PLEO) was incorporated into PCL…
  europepmc 2026 置信度 0.80
• Integrated analyses of host genetics and gut microbiota provide mechanistic insights into feed efficiency in ducks.
  Background Feed efficiency (FE) is a major determinant of productivity, economic sustainability, and environmental impact in livestock production. Although Pekin ducks constitute a substantial proportion of global poultry meat production, improvement of FE has…
  europepmc 2026 置信度 0.80
• <i>Pinus sylvestris</i> Essential Oil-Loaded Gelatin-Chitosan-Snail Slime Nanofibrous Mats for Active Food Packaging Applications.
  Developing biodegradable and functional polymeric materials for active food packaging is essential to mitigate the environmental burden of petroleum-based plastics. In this context, gelatin/chitosan (G-Ch) nanofibrous mats were fabricated via solution blow spi…
  europepmc 2026 置信度 0.80
• Off-target metagenomics: Leveraging whole genome sequencing to study the bacteriome of the liverwort <i>Calasterella californica</i>.
  Premise The recovery of non-target organism reads, especially when whole organisms are sampled, constitutes a great opportunity for studying microbial communities. The increase in whole genome sequencing feasibility and the development of new marker-based pipe…
  europepmc 2026 置信度 0.80
• Exploring the computing power of microbes that shapes the environment.
  Microbes process input information into output responses through diverse genetic and metabolic mechanisms, effectively making them physical systems that compute. These computations profoundly shape the environment, from driving key chemical cycles in the soil …
  europepmc 2026 置信度 0.80
• Programmable Peptide Nanofibers Enable Effective MRSA Biofilm Eradication and Infection Control.
  With antibiotic-resistant bacterial strains rapidly increasing and the development of antibacterial drugs stagnating, alternative solutions are urgently needed. Antimicrobial peptides (AMPs) have emerged as promising therapeutics due to their structural divers…
  europepmc 2026 置信度 0.80
• A comparative analysis of gut microbiome in dogs using short- and long-reads of 16S rRNA sequences reveals workflow-dependent biases.
  Short-read Illumina sequencing of hypervariable regions of the 16S rRNA gene and long-read Oxford Nanopore Technologies (ONT) sequencing of the full-length 16S gene are increasingly used to profile microbial communities. However, differences in sequencing chem…
  europepmc 2026 置信度 0.80
• Carbon monoxide oxidizers in soils of different ages from Piton de la Fournaise volcano.
  Volcanic soils provide a unique environment for studying microbial colonization and succession due to their extreme conditions and distinct geochemical profiles. This study focused on carbon monoxide (CO)-oxidizing microbial communities in volcanic soils at Pi…
  europepmc 2026 置信度 0.80
• ASAS-NANP SYMPOSIUM: MATHEMATICAL MODELING IN ANIMAL NUTRITION: quantum computing in agricultural sciences: from theory to reality.
  Quantum computing (QC) represents a revolutionary paradigm in information processing, leveraging quantum mechanical phenomena (superposition, entanglement, quantum interference, and quantum tunneling) to perform calculations in fundamentally different ways tha…
  europepmc 2026 置信度 0.80
• Genome sequences of five <i>Streptomyces</i> type strains (<i>Streptomyces argenteolus</i>, <i>Streptomyces pratensis</i>, <i>Streptomyces puniceus</i>, <i>Streptomyces spiroverticillatus</i>, and <i>Streptomyces sundarbansensis</i>).
  The genus Streptomyces is one of the largest prokaryotic taxa, including more than 800 species. Sequencing type strain genomes is essential to facilitate the identification of new isolates and the description of novel species. Here, we present the genome seque…
  europepmc 2026 置信度 0.80
• Mutation-driven alterations in the AcrB efflux pump modulate antibiotic resistance in Klebsiella pneumoniae.
  Objectives To investigate the global prevalence of the acrB efflux transporter among antibiotic resistance genes (ARGs) in Klebsiella pneumoniae and to determine how mutations within AcrB drug-binding pockets influence structural stability and antibiotic inter…
  europepmc 2026 置信度 0.80
• AI digital-twin ecosystem translating gut-microbiome-neuroimmune signals into precision sleep-mood interventions.
  We present a novel AI-powered "gut-brain-sleep" digital-twin nursing ecosystem (G-B-S DT-N) that translates microbiome and neuroimmune signals into precision interventions for sleep and mood disorders. The ecosystem integrates four key layers: Microbiome Dynam…
  europepmc 2026 置信度 0.80
• Environmental Census: Modeling Synthetic Biology Ecological Risk with Metagenomic Enzymatic Data and High-Performance Computing.
  Engineered microorganisms in biotechnology present biosafety and environmental management challenges. As the synthetic biology market develops and deploys new technologies, these engineered organisms may escape into unintended environments. Improved predictive…
  europepmc 2025 置信度 0.80
• Microbial communities associated with two populations of the sponge Chondrilla nucula under present and projected climate conditions in the Aegean Sea
  This data paper describes bacterial and fungal communities associated with the sponge Chondrilla nucula collected from two Eastern Mediterranean populations (North and South Aegean Sea) and maintained under controlled common-garden conditions simulating presen…
  europepmc 2026 置信度 0.80
• quickARSC: standalone package and web interface for profiling elemental stoichiometry of proteomes.
  Here, we present quickARSC, a command-line tool computing elemental composition per amino acid residue side chain (ARSC) from amino acid sequences. We also provide the web interface to enable users to access, filter, visualize, and download the pre-computed N-…
  europepmc 2026 置信度 0.80
• The island biology of the host microbiome.
  Microbiomes perform critical functions for their hosts, and understanding microbiome variation is important for both basic and applied science. However, host traits alone cannot explain the entirety of microbiome variation, because, alongside host traits, micr…
  europepmc 2026 置信度 0.80
• Machine learning-based linking of bacterial genomes to optimal growth pH: a foundation for rational microbial engineering.
  Background Bacterial optimal growth pH is pivotal for enzymatic activity, niche adaptation, and synthetic biology applications (e.g., probiotic design, silage fermentation). Traditional experiments are inefficient, resource-intensive, and miss most unculturabl…
  europepmc 2026 置信度 0.80
• PZLAST-MAG: full length protein sequence similarity search server of large-scale MAG proteins.
  Motivation Metagenome-assembled genomes (MAGs) provide access to novel protein sequences from uncultured microbes, offering invaluable resources for studying protein diversity, structure prediction, and evolutionary analysis. However, despite the explosive gro…
  europepmc 2026 置信度 0.80
• Characterization of defensome genes and mobile genetic Elements in different types of pasture soil agroecosystems from the Brazilian Amazon.
  The Amazon rainforest represents nearly 40% of the world's tropical forests and has undergone extensive conversion to pasture, profoundly altering soil microbial communities. Given that bacteriophage-driven selective pressure shapes bacterial defense systems (…
  europepmc 2026 置信度 0.80
• Nutrient Supply Gradients Modulate Cultivation-Driven Restructuring of Microbial Communities in Desert Soils.
  Understanding how cultivation conditions influence the recovery of microbial diversity is critical for interpreting cultivation-derived communities in relation to in situ microbial ecology, particularly in nutrient-limited environments such as desert soils. In…
  europepmc 2026 置信度 0.80
• UCTLFANet: a low-rank fine-tuning model for microalgae image segmentation.
  The fine-tuning module optimizes the model's parameter structure while conserving computing resources. We introduce UCTLFANet, a low-rank fine-tuning model, for microalgae image segmentation. This model supports morphological analysis, cell counting, and physi…
  europepmc 2026 置信度 0.80
• Copper-coated carbon nanotube surfaces for inhibiting biofilm formation by <i>Staphylococcus aureus</i> and <i>Pseudomonas aeruginosa</i>.
  Biofilm-associated infections caused by clinically important pathogens such as Staphylococcus aureus ( S. aureus ) and Pseudomonas aeruginosa ( P. aeruginosa ) remain a major challenge in healthcare settings due to enhanced antimicrobial resistance and persist…
  europepmc 2026 置信度 0.80
• Bacterial topography of the respiratory tract, including pulmonary site-of-disease, in people with active tuberculosis: a case-control study
  Abstract Background : No comprehensive characterization of the respiratory tract (RT) microbiota has been done in people with tuberculosis (TB), a leading global cause of death. Methods : 16S rRNA gene sequencing was done on upper RT (URT; oral-washes, naso- a…
  europepmc 2026 置信度 0.80
• Seagrasses host unique and vulnerable microbiomes, structured by inter-domain microbial interactions.
  Seagrass meadows are vital for coastal ecosystems but are declining worldwide due to human impacts. Microbes play key roles in seagrass health, yet their diversity and functions remain poorly understood. We investigated prokaryotes and microbial eukaryotes ass…
  europepmc 2026 置信度 0.80
• Improved RNA-based metagenomic sequencing for rapid pathogen detection in pets.
  In veterinary medicine, particularly in pet clinics, the accurate and rapid detection of pathogens is crucial for effective disease diagnosis and treatment. Traditional diagnostic methods are often time-consuming and fall short in identifying a broad spectrum …
  europepmc 2026 置信度 0.80
• Rooting for data: A FAIR research data management and data analysis environment for the PlantMicrobe research collaboration.
  europepmc 2025 置信度 0.80
• Phase separation and coexistence in spatial coordination games between microbes.
  Dense, microbial communities are shaped by local interactions between cells. Both the nature of interactions, spanning antagonistic to cooperative, and the strength of interactions vary between and across microbial species and strains. These local interactions…
  europepmc 2026 置信度 0.80
• FreshTrack: an innovative IoT-sensor-driven food freshness estimation framework integrating blockchain.
  Food spoilage significantly increases global waste, particularly for perishable goods, where maintaining real-time freshness is challenging. Monitoring and tracking food freshness ensures food safety, minimizes waste, and enhances supply chain efficiency. This…
  europepmc 2026 置信度 0.80
• UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
  We introduce here a new method for computing differences between microbial communities based on phylogenetic information. This method, UniFrac, measures the phylogenetic distance between sets of taxa in a phylogenetic tree as the fraction of the branch length …
  openalex Catherine Lozupone, Rob Knight 2005-12-01 置信度 0.72 UniFracPhylogenetic treeBiologySeawaterSediment
• A human gut microbial gene catalogue established by metagenomic sequencing
  To understand the impact of gut microbes on human health and well-being it is crucial to assess their genetic potential. Here we describe the Illumina-based metagenomic sequencing, assembly and characterization of 3.3 million non-redundant microbial genes, der…
  openalex Junjie Qin, Ruiqiang Li, Jeroen Raes, Manimozhiyan Arumugam 等 2010-03-01 置信度 0.72 MetagenomicsMicrobiomeBiologyGeneHuman Microbiome Project
• CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  Large-scale recovery of genomes from isolates, single cells, and metagenomic data has been made possible by advances in computational methods and substantial reductions in sequencing costs. Although this increasing breadth of draft genomes is providing key inf…
  openalex Donovan H. Parks, Michael Imelfort, Connor T. Skennerton, Philip Hugenholtz 等 2015-05-14 置信度 0.72 BiologyGenomeMetagenomicsComputational biologyGenetics
• Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
  Advances in modern sequencing technologies allow us to generate sufficient data to analyze hundreds of bacterial genomes from a single machine in a single day. This potential for sequencing massive numbers of genomes calls for fully automated methods to produc…
  openalex Bruce J. Walker, Thomas Abeel, Terrance Shea, Margaret Priest 等 2014-11-19 置信度 0.72 GenomeComputational biologySequence assemblyBiologyIdentification (biology)
• Microbial complexes in subgingival plaque
  It has been recognized for some time that bacterial species exist in complexes in subgingival plaque. The purpose of the present investigation was to attempt to define such communities using data from large numbers of plaque samples and different clustering an…
  openalex S. S. Socransky, A. D. Haffajee, M Cugini, Claire M. Smith 等 1998-02-01 置信度 0.72 Eikenella corrodensTreponema denticolaBiologyMicrobiologyActinobacillus
• The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
  In 2004, the SEED (http://pubseed.theseed.org/) was created to provide consistent and accurate genome annotations across thousands of genomes and as a platform for discovering and developing de novo annotations. The SEED is a constantly updated integration of …
  openalex Ross Overbeek, Robert Olson, Gordon D. Pusch, G J Olsen 等 2013-11-29 置信度 0.72 AnnotationGenomeBiologyGenome projectScripting language
• Artificial neural networks: fundamentals, computing, design, and application
  openalex Imad A. Basheer, Maha N. Hajmeer 2000-12-01 置信度 0.72 Artificial neural networkComputer scienceArtificial intelligenceField (mathematics)Machine learning
• Improved microbial gene identification with GLIMMER
  The GLIMMER system for microbial gene identification finds approximately 97-98% of all genes in a genome when compared with published annotation. This paper reports on two new results: (i) significant technical improvements to GLIMMER that improve its accuracy…
  openalex Art L. Delcher 1999-12-01 置信度 0.72 BiologyGeneIdentification (biology)GenomeGenetics
• A communal catalogue reveals Earth’s multiscale microbial diversity
  Our growing awareness of the microbial world's importance and diversity contrasts starkly with our limited understanding of its fundamental structure. Despite recent advances in DNA sequencing, a lack of standardized protocols and common analytical frameworks …
  openalex Luke Thompson, Jon G. Sanders, Daniel McDonald, Amnon Amir 等 2017-10-31 置信度 0.72 Diversity (politics)Earth (classical element)AstrobiologyEarth scienceGeography
• Microbial diversity drives multifunctionality in terrestrial ecosystems
  Despite the importance of microbial communities for ecosystem services and human welfare, the relationship between microbial diversity and multiple ecosystem functions and services (that is, multifunctionality) at the global scale has yet to be evaluated. Here…
  openalex Manuel Delgado‐Baquerizo, Fernando T. Maestre, Peter B. Reich, Thomas C. Jeffries 等 2016-01-28 置信度 0.72 EcosystemEcosystem servicesTerrestrial ecosystemDiversity (politics)Ecology
• Multivariate analyses in microbial ecology
  Environmental microbiology is undergoing a dramatic revolution due to the increasing accumulation of biological information and contextual environmental parameters. This will not only enable a better identification of diversity patterns, but will also shed mor…
  openalex Alban Ramette 2007-09-24 置信度 0.72 BiologyMicrobial ecologyEcologyMultivariate statisticsToolbox
• Periodontal microbial ecology
  The authors have taken the liberty of presenting this manuscript in two parts.The first is a brief primer on microbial ecology, because, although the importance of microbial ecology in periodontal diseases is widely recognized, most of us do not know precisely…
  openalex S. S. Socransky, Anne D. Haffajee 2005-04-21 置信度 0.72 CitationMedicinePeriodontologyEcologyLibrary science
• Insights into the phylogeny and coding potential of microbial dark matter
  Genome sequencing enhances our understanding of the biological world by providing blueprints for the evolutionary and functional diversity that shapes the biosphere. However, microbial genomes that are currently available are of limited phylogenetic breadth, o…
  openalex Christian Rinke, Patrick Schwientek, Alexander Sczyrba, Natalia Ivanova 等 2013-07-12 置信度 0.72 Tree of life (biology)BiologyMetagenomicsGenomePhylogenetics
• Investigating microbial micro-habitat structure using X-ray computed tomography
  openalex Naoise Nunan, Karl Ritz, Mark L. Rivers, Debbie S. Feeney 等 2005-10-06 置信度 0.72 SemivariancePorositySoil scienceEnvironmental scienceGeostatistics
• VirSorter: mining viral signal from microbial genomic data
  Viruses of microbes impact all ecosystems where microbes drive key energy and substrate transformations including the oceans, humans and industrial fermenters. However, despite this recognized importance, our understanding of viral diversity and impacts remain…
  openalex Simon Roux, François Enault, Bonnie L. Hurwitz, Matthew B. Sullivan 2015-05-28 置信度 0.72 ProphageMetagenomicsGenomeHuman viromeBiology
• Sparse and Compositionally Robust Inference of Microbial Ecological Networks
  16S ribosomal RNA (rRNA) gene and other environmental sequencing techniques provide snapshots of microbial communities, revealing phylogeny and the abundances of microbial populations across diverse ecosystems. While changes in microbial community structure ar…
  openalex Zachary Kurtz, Christian L. Müller, Emily R. Miraldi, Dan R. Littman 等 2015-05-07 置信度 0.72 InferenceMicrobial ecologyStatistical inferenceOperational taxonomic unitComputer science
• Population-based microbial computing: a third wave of synthetic biology?
  Synthetic biology is an emerging research field, in which engineering principles are applied to natural, living systems. A major goal of synthetic biology is to harness the inherent “biological nanotechnology” of living cells for the purposes of computation, p…
  openalex Martyn Amos 2014-05-29 置信度 0.72 Synthetic biologyComputer scienceField (mathematics)PopulationSystems biology
• MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
  We previously reported on MetaBAT, an automated metagenome binning software tool to reconstruct single genomes from microbial communities for subsequent analyses of uncultivated microbial species. MetaBAT has become one of the most popular binning tools largel…
  openalex Dongwan Kang, Feng Li, Edward Kirton, Ashleigh Thomas 等 2019-07-26 置信度 0.72 MetagenomicsComputer scienceGenomeComputational biologyAlgorithm
• Normalization and microbial differential abundance strategies depend upon data characteristics
  BACKGROUND: Data from 16S ribosomal RNA (rRNA) amplicon sequencing present challenges to ecological and statistical interpretation. In particular, library sizes often vary over several ranges of magnitude, and the data contains many zeros. Although we are typi…
  openalex Sophie Weiss, Zhenjiang Zech Xu, Shyamal D. Peddada, Amnon Amir 等 2017-03-03 置信度 0.72 Relative species abundanceNormalization (sociology)TaxonBiologyAbundance (ecology)
• Microbial Co-occurrence Relationships in the Human Microbiome
  The healthy microbiota show remarkable variability within and among individuals. In addition to external exposures, ecological relationships (both oppositional and symbiotic) between microbial inhabitants are important contributors to this variation. It is thu…
  openalex Karoline Faust, J. Fah Sathirapongsasuti, Jacques Izard, Nicola Segata 等 2012-07-12 置信度 0.72 BiologyMicrobiomeFusobacteriaEcological nichePhylogenetic tree
• Effect of ammonia concentration on rumen microbial protein production in vitro
  1. The effect of ammonia concentration on microbial protein production was determined in continuous-culture fermentors charged with ruminal contents obtained from steers fed on either a protein-free purified diet, a maize-based all-concentrate diet, or a forag…
  openalex L.D. Satter, L. L. Slyter 1974-09-01 置信度 0.72 AmmoniaUreaRumenRuminantDry matter
• Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing
  BACKGROUND: The widespread popularity of genomic applications is threatened by the "bioinformatics bottleneck" resulting from uncertainty about the cost and infrastructure needed to meet increasing demands for next-generation sequence analysis. Cloud computing…
  openalex Samuel V. Angiuoli, James R. White, Malcolm Matalka, Owen White 等 2011-10-19 置信度 0.72 Computer scienceMetagenomicsCloud computingBottleneckData mining
• Environmental and stoichiometric controls on microbial carbon‐use efficiency in soils
  Carbon (C) metabolism is at the core of ecosystem function. Decomposers play a critical role in this metabolism as they drive soil C cycle by mineralizing organic matter to CO(2). Their growth depends on the carbon-use efficiency (CUE), defined as the ratio of…
  openalex Stefano Manzoni, Philip Taylor, Andreas Richter, Amilcare Porporato 等 2012-07-11 置信度 0.72 DecomposerBiogeochemical cycleEcosystemNutrientCarbon cycle
• MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
  Grouping large genomic fragments assembled from shotgun metagenomic sequences to deconvolute complex microbial communities, or metagenome binning, enables the study of individual organisms and their interactions. Because of the complex nature of these communit…
  openalex Dongwan Kang, Jeff Froula, Rob Egan, Zhong Wang 2015-08-27 置信度 0.72 MetagenomicsComputer scienceShotgun sequencingGenomeScalability
• Plant diversity increases soil microbial activity and soil carbon storage
  Plant diversity strongly influences ecosystem functions and services, such as soil carbon storage. However, the mechanisms underlying the positive plant diversity effects on soil carbon storage are poorly understood. We explored this relationship using long-te…
  openalex Markus Lange, Nico Eisenhauer, Carlos A. Sierra, Holger Beßler 等 2015-04-07 置信度 0.72 Soil carbonCarbon fibersDiversity (politics)Environmental scienceSoil microbiology