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• A novel image encryption algorithm based on the chaotic system and DNA computing
  A novel image encryption algorithm using the chaotic system and deoxyribonucleic acid (DNA) computing is presented. Different from the traditional encryption methods, the permutation and diffusion of our method are manipulated on the 3D DNA matrix. Firstly, a …
  openalex Xiuli Chai, Zhihua Gan, Yang Lu, Yiran Chen 等 2017-03-21 置信度 0.72 EncryptionAlgorithmComputer scienceChaoticMatrix (chemical analysis)
• Universal computing by DNA origami robots in a living animal
  openalex Yaniv Amir, Eldad Ben-Ishay, Daniel Levner, Shmulik Ittah 等 2014-04-04 置信度 0.72 DNA origamiDNA computingRobotComputer scienceLiving systems
• Cloud computing and the DNA data race
  openalex Michael C. Schatz, Ben Langmead, Steven L. Salzberg 2010-07-01 置信度 0.72 Cloud computingRace (biology)Computer scienceKey (lock)Sequence (biology)
• Information Security Technology Based on DNA Computing
  DNA computing is a new method of simulating biomolecular structure of DNA and computing by means of molecular biology technological computation. It introduces a fire-new data structure and calculating method, providing a new way for solving the NP-complete pro…
  openalex Guangzhao Cui, Limin Qin, Yanfeng Wang, Xuncai Zhang 2007-04-01 置信度 0.72 DNA computingComputer scienceCryptographySteganographyTheoretical computer science
• DNA computing based on chaos
  In this paper a new approach for the realization of the DNA computing paradigm is presented. It exploits the natural richness of chaotic dynamics to efficiently generate and process coded binary sequences following the DNA computing framework introduced by Adl…
  openalex Gabriele Manganaro, José Pineda de Gyvez 2002-11-22 置信度 0.72 DNA computingComputer scienceExploitChaoticTheoretical computer science
• Evolutionary sequence generation for reliable DNA computing
  Since DNA computing technologies use the bio-molecules as basic computing materials, DNA computing involves the possibilities for errors caused by the chemical characteristics of bio-molecules. To overcome these drawbacks, many researchers have studied the des…
  openalex Soo-Yong Shin, Dong‐Min Kim, In‐Hee Lee, Byoung-Tak Zhang 2003-06-25 置信度 0.72 DNA computingComputer scienceSequence (biology)Travelling salesman problemDNA
• DNA Computing Based on Splicing: The Existence of Universal Computers
  openalex Rudolf Freund 1999-02-01 置信度 0.72 Recursively enumerable languageRNA splicingDNA computingTuring machineWord (group theory)
• DNA computing by blocking
  openalex Grzegorz Rozenberg, Herman P. Spaink 2003-01-01 置信度 0.72 Blocking (statistics)DNA computingSatisfiabilityComputer scienceDNA
• Color Image Encryption Algorithm Based on Hyper-Chaos and DNA Computing
  In this study, a novel technique using a hyper chaotic dynamical system and DNA computing has been designed with high plaintext sensitivity. In order to reduce cost, a selection procedure using tent map has been employed for generating different key streams fr…
  openalex M. G. Abbas Malik, Zia Bashir, Nadeem Iqbal, Md Athar Imtiaz 2020-01-01 置信度 0.72 Key spaceComputer scienceAlgorithmPlaintextChaotic
• Membrane Computing
  openalex Gheorghe Pǎun 2002-01-01 置信度 0.72 Membrane computingNatural computingDNA computingQuantum computerUnconventional computing
• An automated DNA computing platform for rapid etiological diagnostics.
  Rapid and accurate classification of the etiology for acute respiratory illness not only helps establish timely therapeutic plans but also prevents inappropriate use of antibiotics. Host gene expression patterns in peripheral blood can discriminate bacterial f…
  europepmc 2022 置信度 0.80
• DNA Computing by Self-Assembly
  Abstract Winfree (1996) proposed a Turing-universal model of DNA self-assembly. In this abstract model, DNA double-crossover molecules self-assemble to form an algorithmically-patterned two-dimensional lattice. Here, we develop a more realistic model based on …
  openalex Erik Winfree 2003-12-01 置信度 0.72 Computer scienceElectronic circuitGenetic programmingNanotechnologyComputational biology
• DNA computing based on splicing: universality results.
  The paper extends some of the most recently obtained results on the computational universality of specific variants of H systems (e.g. with regular sets of rules) and proves that we can construct universal computers based on various types of H systems with a f…
  openalex Erzsébet Csuhaj-Varjú, Rudolf Freund, Lila Kari, Gheorghe Pǎun 1996-01-01 置信度 0.72 Recursively enumerable languageDNA computingUniversality (dynamical systems)Turing machineComputer science
• Small Molecule Release and Activation through DNA Computing.
  DNA-based logic gates can be assembled into computational devices that generate a specific output signal in response to oligonucleotide input patterns. The ability to interface with biological and chemical environments makes DNA computation a promising technol…
  europepmc 2017 置信度 0.80
• Watson–Crick palindromes in DNA computing
  openalex Lila Kari, Kalpana Mahalingam 2009-05-19 置信度 0.72 PalindromeMolecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic AcidCatenationContext (archaeology)Set (abstract data type)
• Design of nucleic acid sequences for DNA computing based on a thermodynamic approach
  We have developed an algorithm for designing multiple sequences of nucleic acids that have a uniform melting temperature between the sequence and its complement and that do not hybridize non-specifically with each other based on the minimum free energy (DeltaG…
  openalex Fumiaki Tanaka 2005-02-18 置信度 0.72 Sequence (biology)AlgorithmComputationHamming codeHamming distance
• DNA computing based RNA genetic algorithm with applications in parameter estimation of chemical engineering processes
  openalex Jili Tao, Ning Wang 2007-02-07 置信度 0.72 CrossoverAlgorithmRNAGenetic algorithmConvergence (economics)
• DNA Computing: Principle, Construction, and Applications in Intelligent Diagnostics
  Demands on faster information processing speed and denser data storage are catalyzing new computation modes. DNA, as an important biomolecule that carries genetic information, has shown its potential in information processing and storage due to its predictable…
  openalex Qian Ma, Chao Zhang, Mingzhi Zhang, Da Han 等 2021-07-29 置信度 0.72 DNA computingComputer sciencePipeline (software)ComputationNanotechnology
• A molecular cryptosystem for images by DNA computing.
  Cracking the encryption: Parallel computing with molecular finite-state automata and fluorescently labeled DNA molecules has been used to decipher two different images encrypted onto a single DNA chip (see picture). The images were deciphered by a mixture of i…
  europepmc 2012 置信度 0.80
• A membrane evolutionary algorithm for DNA sequence design in DNA computing
  DNA sequence design has a crucial role in successful DNA computation, which has been proved to be an NP-hard (non-deterministic polynomial-time hard) problem. In this paper, a membrane evolutionary algorithm is proposed for the DNA sequence design problem. The…
  openalex Jianhua Xiao, Xingyi Zhang, Jin Xu 2012-01-27 置信度 0.72 DNA computingMembrane computingSequence (biology)AlgorithmComputation
• DNA computing
  Computer scientists are joining forces with molecular biologists and chemists to explore the potential for computation using information-carrying biological polymers such as nucleic acids (DNA and RNA). DNA computing is a subset of molecular computing. The key…
  openalex David Lewin 2002-01-01 置信度 0.72 DNA computingDNANucleic acidComputer scienceNanorobotics
• CAP3: A DNA Sequence Assembly Program
  We describe the third generation of the CAP sequence assembly program. The CAP3 program includes a number of improvements and new features. The program has a capability to clip 5' and 3' low-quality regions of reads. It uses base quality values in computation …
  openalex Xiaoqiu Huang, Anup Madan 1999-09-01 置信度 0.72 ContigSequence assemblySequence (biology)BiologyConstruct (python library)
• DNA computing of solutions to knapsack problems
  openalex Christiaan V. Henkel, Thomas Bäck, Joost N. Kok, Grzegorz Rozenberg 等 2006-06-11 置信度 0.72 Knapsack problemContinuous knapsack problemDNA computingComputationComputer science
• Multiple Word DNA Computing on Surfaces
  The enzymatic manipulation of DNA molecules immobilized on a surface that each contain linked, multiple “DNA words” is demonstrated, with applications to DNA computing. A new DESTROY operation to selectively remove unmarked DNA strands from surfaces, consistin…
  openalex Liman Wang, Qinghua Liu, Robert M. Corn, Anne Condon 等 2000-07-20 置信度 0.72 ChemistryDNARestriction enzymeDNA polymeraseDNA clamp
• DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
  We present version 6 of the DNA Sequence Polymorphism (DnaSP) software, a new version of the popular tool for performing exhaustive population genetic analyses on multiple sequence alignments. This major upgrade incorporates novel functionalities to analyze la…
  openalex Julio Rozas, Albert Ferrer-Mata, Juan Carlos Sánchez-DelBarrio, Sara Guirao‐Rico 等 2017-09-18 置信度 0.72 BiologyCoalescent theoryComputational biologyDNA sequencingLocus (genetics)
• <i>In vivo</i> formation and repair of DNA double-strand breaks after computed tomography examinations
  Ionizing radiation can lead to a variety of deleterious effects in humans, most importantly to the induction of cancer. DNA double-strand breaks (DSBs) are among the most significant genetic lesions introduced by ionizing radiation that can initiate carcinogen…
  openalex Markus Löbrich, Nicole Rief, Martin Kühne, M Heckmann 等 2005-06-13 置信度 0.72 Ionizing radiationDouble strandRadiosensitivityIn vivoDNA repair
• A Review on DNA Computing Models
  Peer-reviewed
  openalex Xu Jin, Gangjun Tan 2007-02-26 置信度 0.72 DNAComputational biologyBiophysicsNanotechnologyChemistry
• DNA Computing and Its Application to Information Security Field
  DNA computing is a new computational paradigm by harnessing the potential massive parallelism, high density information of bio-molecules and low power consumption, which brings potential challenges and opportunities to traditional cryptography. In this paper, …
  openalex Guangzhao Cui, Cuiling Li, Haobin Li, Xiaoguang Li 2009-01-01 置信度 0.72 DNA computingComputer scienceSteganographyCryptographyField (mathematics)
• DNA Computing: A Review
  DNA computing holds out the promise of important and significant connections between computers and living systems, as well as promising massively parallel computations. Before these promises are fulfilled, however, important challenges related to err
  openalex Russell Deaton, Max Garzón, John A. Rose, Donald R. Franceschetti 等 1998-01-01 置信度 0.72 Computer scienceDNA computingComputational biologyDNABiology
• A light weight secure image encryption scheme based on chaos &amp; DNA computing
  This paper proposed a new light weight secure cryptographic scheme for secure image communication. In this scheme the plain image is permuted first using a sequence of pseudo random number (PRN) and encrypted by DeoxyriboNucleic Acid (DNA) computation. Two PRN…
  openalex Bhaskar Mondal, Tarni Mandal 2016-03-31 置信度 0.72 EncryptionPermutation (music)Pseudorandom number generatorImage (mathematics)Logistic map
• A restricted genetic alphabet for DNA computing
  openalex Kalim U. Mir 1998-10-19 置信度 0.72 AlphabetComputer scienceGeneticsComputational biologyBiology
• Computing with DNA by operating on plasmids
  openalex Tom Head, Grzegorz Rozenberg, Reno S. Bladergroen, C. K. D. Breek 等 2000-07-01 置信度 0.72 PlasmidComputationDNA computingRestriction enzymeComputer science
• DNA Computing and its Application
  openalex Junzo Watada 2008-01-01 置信度 0.72 DNA computingComputer scienceComputationScheduling (production processes)NP-complete
• DnaSP, DNA polymorphism analyses by the coalescent and other methods
  SUMMARY: DnaSP is a software package for the analysis of DNA polymorphism data. Present version introduces several new modules and features which, among other options allow: (1) handling big data sets (approximately 5 Mb per sequence); (2) conducting a large n…
  openalex Julio Rozas, Juan Carlos Sánchez-DelBarrio, Xavier Messeguer, R. Rozas 2003-12-10 置信度 0.72 Coalescent theorySoftwareDocumentationR packageComputer science
• DNA molecule provides a computing machine with both data and fuel
  The unique properties of DNA make it a fundamental building block in the fields of supramolecular chemistry, nanotechnology, nano-circuits, molecular switches, molecular devices, and molecular computing. In our recently introduced autonomous molecular automato…
  openalex Yaakov Benenson, Rivka Adar, Tamar Paz-Elizur, Zvi Livneh 等 2003-02-24 置信度 0.72 SoftwareDNA computingComputer scienceAutomatonMolecular machine
• An integrated microfluidic processor for single nucleotide polymorphism-based DNA computing
  An integrated microfluidic processor is developed that performs molecular computations using single nucleotide polymorphisms (SNPs) as binary bits. A complete population of fluorescein-labeled DNA "answers" is synthesized containing three distinct polymorphic …
  openalex William H. Grover, Richard A. Mathies 2005-01-01 置信度 0.72 MicrofluidicsDNA computingOligonucleotideComputationDNA
• DNA computing using single-molecule hybridization detection
  DNA computing aims at using nucleic acids for computing. Since micromolar DNA solutions can act as billions of parallel nanoprocessors, DNA computers can in theory solve optimization problems that require vast search spaces. However, the actual parallelism cur…
  openalex Kristiane A. Schmidt 2004-09-23 置信度 0.72 DNA computingDNAComputationBiologyNucleic acid
• HAIE: a hybrid adaptive image encryption algorithm using Chaos and DNA computing
  openalex Shaista Mansoor, Shabir A. Parah 2023-02-22 置信度 0.72 Logistic mapEncryptionAlgorithmComputer scienceHybrid image
• Implementing digital computing with DNA-based switching circuits
  DNA strand displacement reactions (SDRs) provide a set of intelligent toolboxes for developing molecular computation. Whereas SDR-based logic gate circuits have achieved a high level of complexity, the scale-up for practical achievable computational tasks rema…
  openalex Fei Wang, Hui Lv, Qian Li, Jiang Li 等 2020-01-08 置信度 0.72 Computer scienceAdderDNA computingElectronic circuitDigital electronics
• A Novel Image Encryption Algorithm Based on a Fractional-Order Hyperchaotic System and DNA Computing
  In the era of the Internet, image encryption plays an important role in information security. Chaotic systems and DNA operations have been proven to be powerful for image encryption. To further enhance the security of image, in this paper, we propose a novel a…
  openalex Taiyong Li, Minggao Yang, Jiang Wu, Xin Jing 2017-01-01 置信度 0.72 EncryptionAlgorithmProbabilistic encryptionPermutation (music)Computer science
• Creating the CIPRES Science Gateway for inference of large phylogenetic trees
  Understanding the evolutionary history of living organisms is a central problem in biology. Until recently the ability to infer evolutionary relationships was limited by the amount of DNA sequence data available, but new DNA sequencing technologies have largel…
  openalex Mark A. Miller, Wayne Pfeiffer, Terri Schwartz 2010-11-01 置信度 0.72 ScalabilityComputer scienceLaptopData scienceGateway (web page)
• DNA Computing: New Ideas and Paradigms
  openalex Grzegorz Rozenberg, Arto Salomaa 1999-01-01 置信度 0.72 DNA computingComputer scienceComplementarity (molecular biology)TuringTheoretical computer science
• Towards DNA based data security in the cloud computing environment
  Abstract Nowadays, data size is increasing day by day from gigabytes to terabytes or even petabytes, mainly because of the evolution of a large amount of real-time data. Most of the big data is transmitted through the internet and they are stored on the cloud …
  openalex Suyel Namasudra, D Devi, Seifedine Kadry, Revathi Sundarasekar 等 2020-01-02 置信度 0.72 Computer scienceCloud computingDNA computingTerabyteBig data
• Nanopore Decoding of Oligonucleotides in DNA Computing.
  In conventional DNA-computation methods involving logic gate operations, the output molecules are detected and decoded mainly by gel electrophoresis or fluorescence measurements. To employ rapid and label-free decoding, nanopore technology, an emerging methodo…
  europepmc 2018 置信度 0.80
• A new color image encryption technique using DNA computing and Chaos-based substitution box
  Abstract In many cases, images contain sensitive information and patterns that require secure processing to avoid risk. It can be accessed by unauthorized users who can illegally exploit them to threaten the safety of people’s life and property. Protecting the…
  openalex Fawad Masood, Junaid Masood, Lejun Zhang, Sajjad Shaukat Jamal 等 2021-12-01 置信度 0.72 EncryptionComputer scienceChaoticCHAOS (operating system)Algorithm
• Molecular solution to the 0–1 knapsack problem based on DNA computing
  openalex Majid Darehmiraki, Hasan Mishmast Nehi 2006-10-18 置信度 0.72 Knapsack problemContinuous knapsack problemCombinatorial optimizationCutting stock problemGeneralized assignment problem
• An RGB Image Cipher Using Chaotic Systems, 15-Puzzle Problem and DNA Computing
  The application of confusion and diffusion processes on the three individual components of an RGB image is not secure and efficient, so this problem needs to be addressed. In this paper, a novel RGB image cipher is proposed using chaotic systems, 15-puzzle art…
  openalex Nadeem Iqbal, Sagheer Abbas, Muhammad Adnan Khan, Tahir Alyas 等 2019-01-01 置信度 0.72 Computer scienceComputer visionArtificial intelligenceGrayscalePixel
• A DNA computing readout operation based on structure-specific cleavage
  openalex Liman Wang, Jeff G. Hall, Manchun Lu, Qinghua Liu 等 2001-11-01 置信度 0.72 Cleavage (geology)DNAComputational biologyComputer scienceAlgorithm
• Computing and Bounding Equilibrium Concentrations in Athermic Chemical Systems
  Computing equilibrium concentrations of molecular complexes is generally analytically intractable and requires numerical approaches. In this work we focus on the polymer-monomer level, where indivisible molecules (monomers) combine to form complexes (polymers)…
  arxiv Hamidreza Akef, Minki Hhan, David Soloveichik 2025-07-17T00:26:38Z 置信度 0.78 cs.DSq-bio.MN
• Effect of Internal Viscosity on Brownian Dynamics of DNA Molecules in Shear Flow
  The results of Brownian dynamics simulations of a single DNA molecule in shear flow are presented taking into account the effect of internal viscosity. The dissipative mechanism of internal viscosity is proved necessary in the research of DNA dynamics. A stoch…
  arxiv Jack Yang, Roderick V. N. Melnik 2007-03-01T18:01:10Z 置信度 0.78 q-bio.BM
• scadnano: A browser-based, scriptable tool for designing DNA nanostructures
  We introduce $\textit{scadnano}$ (https://scadnano.org) (short for "scriptable cadnano"), a computational tool for designing synthetic DNA structures. Its design is based heavily on cadnano, the most widely-used software for designing DNA origami, with three m…
  arxiv David Doty, Benjamin L Lee, Tristan Stérin 2020-05-24T21:00:29Z 置信度 0.78 cs.ETq-bio.BM
• The Art of DNA Strings: Sixteen Years of DNA Coding Theory
  The idea of computing with DNA was given by Tom Head in 1987, however in 1994 in a seminal paper, the actual successful experiment for DNA computing was performed by Adleman. The heart of the DNA computing is the DNA hybridization, however, it is also the sour…
  arxiv Dixita Limbachiya, Bansari Rao, Manish K. Gupta 2016-07-01T14:44:35Z 置信度 0.78 cs.ITcs.ET
• DNA Nanotechnology Meets Nanophotonics
  In the past decades, DNA has been intensely studied and exploited in different research areas of nanoscience and nanotechnology. At first glance, DNA-based nanophotonics seems to deviate quite far from the original goal of Nadrian Seeman, the founder of DNA na…
  arxiv Na Liu 2021-05-10T13:32:46Z 置信度 0.78 physics.bio-ph
• A Novel Method for Comparative Analysis of DNA Sequences by Ramanujan-Fourier Transform
  Alignment-free sequence analysis approaches provide important alternatives over multiple sequence alignment (MSA) in biological sequence analysis because alignment-free approaches have low computation complexity and are not dependent on high level of sequence …
  arxiv Changchuan Yin, Xuemeng E. Yin, Jiasong Wang 2014-03-06T18:29:52Z 置信度 0.78 cs.CEcs.AI
• Development of Hydrogen Bonding Magnetic Reaction-based Gene Regulation through Cyclic Electromagnetic DNA Simulation in Double-Stranded DNA
  The proton-magnetic reaction is commonly used in MRI machines with a strong magnetic field of over 1 T, while this study hypothesized that the electron magnetic reaction of hydrogen could affect the hydrogen bonds of double-stranded DNA (dsDNA) at a low magnet…
  arxiv Yeon Sook Kim, Dae Gwan Lee, Suk Keun Lee 2012-10-26T10:25:03Z 置信度 0.78 q-bio.OT
• Recoiling DNA Molecule: Simulation &amp; Experiment
  Single molecule DNA experiments often generate data from force versus extension measurements involving the tethering of a microsphere to one end of a single DNA molecule while the other is attached to a substrate. We show that the persistence length of single …
  arxiv Jose Coelho Neto, Ronald Dickman, O. N. Mesquita 2002-03-27T20:50:14Z 置信度 0.78 physics.bio-phcond-mat.stat-mechq-bio
• Statics and Dynamics of Condensed DNA within Phages and Globules
  Several controversial issues concerning the packing of linear DNA in bacteriophages and globules are discussed. Exact relations for the osmotic pressure, capsid pressure and loading force are derived in terms of the hole size inside phages under the assumption…
  arxiv Theo Odijk 2003-05-15T14:08:43Z 置信度 0.78 cond-mat.softq-bio
• Information profiles for DNA pattern discovery
  Finite-context modeling is a powerful tool for compressing and hence for representing DNA sequences. We describe an algorithm to detect genomic regularities, within a blind discovery strategy. The algorithm uses information profiles built using suitable combin…
  arxiv Armando J. Pinho, Diogo Pratas, Paulo J. S. G. Ferreira 2014-01-19T19:44:07Z 置信度 0.78 q-bio.GNcs.IT
• Influence of pore dielectric boundaries on the translocation barrier of DNA
  We investigate the impact of dielectric boundary forces on the translocation process of charged rigid DNA segments through solid neutral nanopores. We assess the electrostatic contribution to the translocation free energy barrier of a model DNA segment by eval…
  arxiv Stefan Kesselheim, Marcello Sega, Christian Holm 2010-02-14T09:10:18Z 置信度 0.78 cond-mat.softcond-mat.mes-hallphysics.bio-ph
• Investigation by physical methods of the possible role of telomeres in DNA in aging process
  The interaction energies between the different types of bases of a single strand of DNA molecule have been calculated. Using these original values of energies the harmonic behavior of a number of base patterns of DNA has been studied. In view of the great inte…
  arxiv Md. Ashrafuzzaman, Ahmed Shafee 2003-01-15T14:21:28Z 置信度 0.78 physics.bio-phphysics.chem-phq-bio
• Cold Start Latency in Serverless Computing: A Systematic Review, Taxonomy, and Future Directions
  Recently, academics and the corporate sector have paid attention to serverless computing, which enables dynamic scalability and an economic model. In serverless computing, users only pay for the time they actually use resources, enabling zero scaling to optimi…
  arxiv Muhammed Golec, Guneet Kaur Walia, Mohit Kumar, Felix Cuadrado 等 2023-10-12T16:01:46Z 置信度 0.78 cs.DC
• Multifractal analysis of DNA walks and trails
  The characterization of the long-range order and fractal properties of DNA sequences has proved a difficult though highly rewarding task due mainly to the mosaic character of DNA consisting of many interwoven patches of various lengths with different nucleotid…
  arxiv Alexandre Rosas, Edvaldo Nogueira, José F. Fontanari 2002-09-17T14:11:36Z 置信度 0.78 cond-mat.stat-mechq-bio
• Like-charge attraction and opposite-charge decomplexation between polymers and DNA molecules
  We scrutinize the effect of polyvalent ions on polymer-DNA interactions. We extend a recently developed test charge theory to the case of a stiff polymer interacting with a DNA molecule in an electrolyte mixture. The theory accounts for one-loop level electros…
  arxiv Sahin Buyukdagli 2016-09-17T13:20:37Z 置信度 0.78 cond-mat.soft
• On Optimal Family of Codes for Archival DNA Storage
  DNA based storage systems received attention by many researchers. This includes archival and re-writable random access DNA based storage systems. In this work, we have developed an efficient technique to encode the data into DNA sequence by using non-linear fa…
  arxiv Dixita Limbachiya, Vijay Dhameliya, Madhav Khakhar, Manish K Gupta 2015-01-28T15:07:30Z 置信度 0.78 cs.IT
• Characterization of DNA methylation as a function of biological complexity via dinucleotide inter-distances
  We perform a statistical study of the distances between successive occurrencies of a given dinucleotide in the DNA sequence for a number of organisms of different complexity. Our analysis highlights peculiar features of the dinucleotide CG distribution in mamm…
  arxiv Giulia Paci, Giampaolo Cristadoro, Barbara Monti, Marco Lenci 等 2015-11-26T16:30:39Z 置信度 0.78 q-bio.QMphysics.bio-phq-bio.GNstat.AP
• An algorithm for DNA read alignment on quantum accelerators
  With small-scale quantum processors transitioning from experimental physics labs to industrial products, these processors allow us to efficiently compute important algorithms in various fields. In this paper, we propose a quantum algorithm to address the chall…
  arxiv Aritra Sarkar, Zaid Al-Ars, Carmen G. Almudever, Koen Bertels 2019-09-12T11:01:55Z 置信度 0.78 quant-phcs.ETq-bio.GN
• Charge Transport in DNA-Based Devices
  Charge migration along DNA molecules has attracted scientific interest for over half a century. Reports on possible high rates of charge transfer between donor and acceptor through the DNA, obtained in the last decade from solution chemistry experiments on lar…
  arxiv Danny Porath, Gianaurelio Cuniberti, Rosa Di Felice 2004-03-25T17:47:52Z 置信度 0.78 cond-mat.mtrl-scicond-mat.softq-bio.BM
• Solving the Hamiltonian path problem with a light-based computer
  In this paper we propose a special computational device which uses light rays for solving the Hamiltonian path problem on a directed graph. The device has a graph-like representation and the light is traversing it by following the routes given by the connectio…
  arxiv Mihai Oltean 2007-08-10T20:01:24Z 置信度 0.78 cs.ARcs.DC
• New Measurements of DNA Twist Elasticity
  The symmetries of the DNA double helix require a new term in its linear response to stress: the coupling between twist and stretch. Recent experiments with torsionally-constrained single molecules give the first direct measurement of this new material paramete…
  arxiv Philip Nelson 1997-08-14T20:57:25Z 置信度 0.78 cond-mat.softq-bio
• Tierkreis: A Dataflow Framework for Hybrid Quantum-Classical Computing
  We present Tierkreis, a higher-order dataflow graph program representation and runtime designed for compositional, quantum-classical hybrid algorithms. The design of the system is motivated by the remote nature of quantum computers, the need for hybrid algorit…
  arxiv Seyon Sivarajah, Lukas Heidemann, Alan Lawrence, Ross Duncan 2022-11-04T10:14:47Z 置信度 0.78 quant-phcs.DC
• Quantum Computing: Vision and Challenges
  The recent development of quantum computing, which uses entanglement, superposition, and other quantum fundamental concepts, can provide substantial processing advantages over traditional computing. These quantum features help solve many complex problems that …
  arxiv Sukhpal Singh Gill, Oktay Cetinkaya, Stefano Marrone, Daniel Claudino 等 2024-03-04T17:33:18Z 置信度 0.78 cs.DCcs.ETquant-ph
• Synthetic Biology meets Neuromorphic Computing: Towards a bio-inspired Olfactory Perception System
  In this study, we explore how the combination of synthetic biology, neuroscience modeling, and neuromorphic electronic systems offers a new approach to creating an artificial system that mimics the natural sense of smell. We argue that a co-design approach off…
  arxiv Kevin Max, Larissa Sames, Shimeng Ye, Jan Steinkühler 等 2025-04-14T09:57:20Z 置信度 0.78 cs.NEcs.ETq-bio.NC
• A Comparative Study of Load Balancing Algorithms in Cloud Computing Environment
  Cloud Computing is a new trend emerging in IT environment with huge requirements of infrastructure and resources. Load Balancing is an important aspect of cloud computing environment. Efficient load balancing scheme ensures efficient resource utilization by pr…
  arxiv Mayanka Katyal, Atul Mishra 2014-03-27T05:07:28Z 置信度 0.78 cs.DC
• Conformations of closed DNA
  We examine the conformations of a model for a short segment of closed DNA. The molecule is represented as a cylindrically symmetric elastic rod with a constraint corresponding to a specification of the linking number. We obtain analytic expressions leading to …
  arxiv Boris Fain, Joseph Rudnick 1999-03-24T18:00:27Z 置信度 0.78 cond-mat.softphysics.bio-phq-bio.BM
• Universal Workers: A Vision for Eliminating Cold Starts in Serverless Computing
  Serverless computing enables developers to deploy code without managing infrastructure, but suffers from cold start overhead when initializing new function instances. Existing solutions such as "keep-alive" or "pre-warming" are costly and unreliable under burs…
  arxiv Saman Akbari, Manfred Hauswirth 2025-05-26T12:06:12Z 置信度 0.78 cs.DCcs.PF
• Placement of Microservices-based IoT Applications in Fog Computing: A Taxonomy and Future Directions
  The Fog computing paradigm utilises distributed, heterogeneous and resource-constrained devices at the edge of the network for efficient deployment of latency-critical and bandwidth-hungry IoT application services. Moreover, MicroService Architecture (MSA) is …
  arxiv Samodha Pallewatta, Vassilis Kostakos, Rajkumar Buyya 2022-07-12T09:03:08Z 置信度 0.78 cs.DC
• Lectures on DNA Codes
  For $q$-ary $n$-sequences, we develop the concept of similarity functions that can be used (for $q=4$) to model a thermodynamic similarity on DNA sequences. A similarity function is identified by the length of a longest common subsequence between two $q$-ary $…
  arxiv A. Dyachkov 2014-01-29T12:37:45Z 置信度 0.78 cs.ITq-bio.QM
• Supporting Multi-Cloud in Serverless Computing
  Serverless computing is a widely adopted cloud execution model composed of Function-as-a-Service (FaaS) and Backend-as-a-Service (BaaS) offerings. The increased level of abstraction makes vendor lock-in inherent to serverless computing, raising more concerns t…
  arxiv Haidong Zhao, Zakaria Benomar, Tobias Pfandzelter, Nikolaos Georgantas 2022-09-19T22:21:11Z 置信度 0.78 cs.DC
• Presence of pKa Perturbations Among Homeodomain Residues Facilitates DNA Binding
  Homeodomain containing proteins are a broad class of DNA binding proteins that are believed to primarily function as transcription factors. Electrostatics interactions have been demonstrated to be critical for the binding of the homeodomain to DNA. An examinat…
  arxiv Christopher M. Frenz, Philippe P. Lefebvre 2009-07-28T02:11:59Z 置信度 0.78 q-bio.BM
• DiscDiff: Latent Diffusion Model for DNA Sequence Generation
  This paper introduces a novel framework for DNA sequence generation, comprising two key components: DiscDiff, a Latent Diffusion Model (LDM) tailored for generating discrete DNA sequences, and Absorb-Escape, a post-training algorithm designed to refine these s…
  arxiv Zehui Li, Yuhao Ni, William A V Beardall, Guoxuan Xia 等 2024-02-08T22:06:55Z 置信度 0.78 q-bio.GNcs.AIcs.LG
• The Secure Storage Capacity of a DNA Wiretap Channel Model
  In this paper, we propose a strategy for making DNA-based data storage information-theoretically secure through the use of wiretap channel coding. This motivates us to extend the shuffling-sampling channel model of Shomorony and Heckel (2021) to include a wire…
  arxiv Praneeth Kumar Vippathalla, Navin Kashyap 2022-01-16T07:43:11Z 置信度 0.78 cs.IT
• QAISim: A Toolkit for Modeling and Simulation of AI in Quantum Cloud Computing Environments
  Quantum computing offers new ways to explore the theory of computation via the laws of quantum mechanics. Due to the rising demand for quantum computing resources, there is growing interest in developing cloud-based quantum resource sharing platforms that enab…
  arxiv Irwindeep Singh, Sukhpal Singh Gill, Jinzhao Sun, Jan Mol 2025-12-01T16:14:25Z 置信度 0.78 cs.DCcs.LG
• A Manifesto for Modern Fog and Edge Computing: Vision, New Paradigms, Opportunities, and Future Directions
  The advancements in the use of Internet of Things (IoT) devices is increasing continuously and generating huge amounts of data in a fast manner. Cloud computing is an important paradigm which processes and manages user data effectively. Further, fog and edge c…
  arxiv Sukhpal Singh Gill 2021-09-19T09:25:18Z 置信度 0.78 cs.DC
• Peer-to-Peer Secure Multi-Party Numerical Computation
  We propose an efficient framework for enabling secure multi-party numerical computations in a Peer-to-Peer network. This problem arises in a range of applications such as collaborative filtering, distributed computation of trust and reputation, monitoring and …
  arxiv Danny Bickson, Genia Bezman, Danny Dolev, Benny Pinkas 2008-10-09T13:07:36Z 置信度 0.78 cs.CRcs.DC
• Transition on the entropic elasticity of DNA induced by intercalating molecules
  We use optical tweezers to perform stretching experiments on DNA molecules when interacting with the drugs daunomycin and ethidium bromide, which intercalate the DNA molecule. These experiments are performed in the low-force regime from zero up to 2 pN. Our re…
  arxiv M. S. Rocha, M. C. Ferreira, O. N. Mesquita 2007-04-18T13:38:35Z 置信度 0.78 physics.bio-phphysics.chem-ph
• Quantum error correction with the toric code
  Quantum computing platforms based on arrays of tweezer-confined neutral atoms have recently emerged as a competitive modality thanks to a direct path toward high qubit count, rapidly advancing operation fidelities, and their ability to execute circuits with ar…
  arxiv Atom Computing, Collaborators 2026-06-02T17:50:21Z 置信度 0.78 quant-phcond-mat.quant-gasphysics.atom-ph
• Load Distribution Composite Design Pattern for Genetic Algorithm-Based Autonomic Computing Systems
  Current autonomic computing systems are ad hoc solutions that are designed and implemented from the scratch. When designing software, in most cases two or more patterns are to be composed to solve a bigger problem. A composite design patterns shows a synergy t…
  arxiv Vishnuvardhan Mannava, T. Ramesh 2012-09-08T17:39:46Z 置信度 0.78 cs.SEcs.DCcs.NE
• Structure Learning of Deep Networks via DNA Computing Algorithm
  Convolutional Neural Network (CNN) has gained state-of-the-art results in many pattern recognition and computer vision tasks. However, most of the CNN structures are manually designed by experienced researchers. Therefore, auto- matically building high perform…
  arxiv Guoqiang Zhong, Tao Li, Wenxue Liu, Yang Chen 2018-10-25T02:06:24Z 置信度 0.78 cs.NEcs.CV
• 2D Barcode for DNA Encoding
  The paper presents a solution for endcoding/decoding DNA information in 2D barcodes. First part focuses on the existing techniques and symbologies in 2D barcodes field. The 2D barcode PDF417 is presented as starting point. The adaptations and optimizations on …
  arxiv Elena Purcaru, Cristian Toma 2012-01-01T22:30:34Z 置信度 0.78 cs.IT
• Application of Selective Algorithm for Effective Resource Provisioning in Cloud Computing Environment
  Modern day continued demand for resource hungry services and applications in IT sector has led to development of Cloud computing. Cloud computing environment involves high cost infrastructure on one hand and need high scale computational resources on the other…
  arxiv Mayanka Katyal, Atul Mishra 2014-03-12T12:50:04Z 置信度 0.78 cs.DCcs.NI
• In-Situ Assessment of Device-Side Compute Work for Dynamic Load Balancing in a GPU-Accelerated PIC Code
  Maintaining computational load balance is important to the performant behavior of codes which operate under a distributed computing model. This is especially true for GPU architectures, which can suffer from memory oversubscription if improperly load balanced.…
  arxiv Michael E. Rowan, Axel Huebl, Kevin N. Gott, Jack Deslippe 等 2021-04-23T02:43:45Z 置信度 0.78 cs.DCphysics.acc-phphysics.comp-phphysics.plasm-ph
• The role of interactive super-computing in using HPC for urgent decision making
  Technological advances are creating exciting new opportunities that have the potential to move HPC well beyond traditional computational workloads. In this paper we focus on the potential for HPC to be instrumental in responding to disasters such as wildfires,…
  arxiv Nick Brown, Rupert Nash, Gordon Gibb, Bianca Prodan 等 2020-10-17T12:15:40Z 置信度 0.78 cs.DC
• Phoenix Cloud: Consolidating Different Computing Loads on Shared Cluster System for Large Organization
  Different departments of a large organization often run dedicated cluster systems for different computing loads, like HPC (high performance computing) jobs or Web service applications. In this paper, we have designed and implemented a cloud management system s…
  arxiv Jianfeng Zhan, Lei Wang, Bibo Tu, Yong Li 等 2009-06-07T10:15:28Z 置信度 0.78 cs.DC
• BSMBench: a flexible and scalable supercomputer benchmark from computational particle physics
  Lattice Quantum ChromoDynamics (QCD), and by extension its parent field, Lattice Gauge Theory (LGT), make up a significant fraction of supercomputing cycles worldwide. As such, it would be irresponsible not to evaluate machines' suitability for such applicatio…
  arxiv Ed Bennett, Luigi Del Debbio, Kirk Jordan, Biagio Lucini 等 2014-01-15T20:33:38Z 置信度 0.78 cs.DChep-lat
• Comparing transient oligonucleotide hybridization kinetics using DNA-PAINT and optoplasmonic single-molecule sensing on gold nanorods
  We report a comparison of two photonic techniques for single-molecule sensing: fluorescence nanoscopy and optoplasmonic sensing. As the test system, oligonucleotides with and without fluorescent labels are transiently hybridized to complementary docking strand…
  arxiv Narima Eerqing, Sivaraman Subramanian, Jesús Rubio, Tobias Lutz 等 2021-03-12T20:50:01Z 置信度 0.78 physics.opticscond-mat.mes-hallcond-mat.softphysics.ins-det
• Small tile sets that compute while solving mazes
  We ask the question of how small a self-assembling set of tiles can be yet have interesting computational behaviour. We study this question in a model where supporting walls are provided as an input structure for tiles to grow along: we call it the Maze-Walkin…
  arxiv Matthew Cook, Tristan Stérin, Damien Woods 2021-06-23T12:15:38Z 置信度 0.78 cs.ETcs.CCcs.DM
• LV Barcoding: locality sensitive hashing-based tool for rapid species identification in DNA barcoding
  DNA barcoding has emerged as a cost-effective approach for species identification. However, the scarcity of tools used for searching the booming reference database becomes an obstacle, currently with BLAST as the only practical choice. Here, we propose a progr…
  arxiv Long Fan, Ka Hou Chu 2014-07-12T06:05:29Z 置信度 0.78 q-bio.PE
• DNA-Rendering: A Diverse Neural Actor Repository for High-Fidelity Human-centric Rendering
  Realistic human-centric rendering plays a key role in both computer vision and computer graphics. Rapid progress has been made in the algorithm aspect over the years, yet existing human-centric rendering datasets and benchmarks are rather impoverished in terms…
  arxiv Wei Cheng, Ruixiang Chen, Wanqi Yin, Siming Fan 等 2023-07-19T17:58:03Z 置信度 0.78 cs.CV
• Strengths and Weaknesses of Quantum Computing
  Recently a great deal of attention has focused on quantum computation following a sequence of results suggesting that quantum computers are more powerful than classical probabilistic computers. Following Shor's result that factoring and the extraction of discr…
  arxiv Charles H. Bennett, Ethan Bernstein, Gilles Brassard, Umesh Vazirani 1997-01-01T13:55:07Z 置信度 0.78 quant-ph
• Persistence length of chromatin determines origin spacing in Xenopus early-embryo DNA replication: Quantitative comparisons between theory and experiment
  In Xenopus early embryos, replication origins neither require specific DNA sequences nor is there an efficient S/M checkpoint, even though the whole genome (3 billion bases) is completely duplicated within 10-20 minutes. This leads to the"random-completion pro…
  arxiv Suckjoon Jun, John Herrick, Aaron Bensimon, John Bechhoefer 2003-11-24T06:17:45Z 置信度 0.78 q-bio.QMq-bio.BM