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AI Genomics CollecTive (AIGCT) is a platform for systematically evaluating ML/AI models of variant effects across the spectrum of genomics-based precision medicine. It consists of a database of variant effect data organized into categories based on the source …
datacite
Fratarcangeli, Claudio
2026
置信度 0.66
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Molecular Blueprint The Secondary Signature of the Immune System Framework / The Architecture of Secondary Stage Anti-Cooling-Coding-Maintenance (ACCM) Author: Sam Coole Foreword This work is not a minor revision to existing immunology—it is a paradigm reset.…
datacite
COOLE, SAM
2026
置信度 0.66
-
Molecular Blueprint The Secondary Signature of the Immune System Framework / The Architecture of Secondary Stage Anti-Cooling-Coding-Maintenance (ACCM) Author: Sam Coole Foreword This work is not a minor revision to existing immunology—it is a paradigm reset.…
datacite
COOLE, SAM
2026
置信度 0.66
-
Host-Centric Sequestration: An Advanced Logical Synthesis, Empirical Validation, and Systems-Level Architecture of HIV-1 Latency and Pathogen Containment as Active Cellular Self-Preservation **Sam Coole** *INDEPENDENT RESEARCHER* *DOI: 10.5281/zenodo.21394164 …
datacite
Coole, Sam
2026
置信度 0.66
-
Host-Centric Sequestration: An Advanced Logical Synthesis, Empirical Validation, and Systems-Level Architecture of HIV-1 Latency and Pathogen Containment as Active Cellular Self-Preservation **Sam Coole** *INDEPENDENT RESEARCHER* *DOI: 10.5281/zenodo.21394164 …
datacite
Coole, Sam
2026
置信度 0.66
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Sardine (Sardinops spp.) are ecologically important forage fishes distributed globally across temperate, coastal upwelling zones and, when abundant, they support major fisheries. Previous genomic analyses of Pacific Sardine (S. sagax) in the Northeast Pacific …
datacite
Longo, Gary, Craig, Matthew
2026
置信度 0.66
FOS: Agriculture, forestry, and fisheriesAnimal geneticsFish genomicsFisheries
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Figure 10. Alignment, presented as a LOGO figure, of the three putative proteins orf298 from Mitosporidium Mtspo_JL467, orf287 from Mitosporidium Mtspo_JL472 and orf295 from Mitosporidium daphniae. A partial LAGLIDADG domain was retained in the three species (…
datacite
Gastineau, Romain, Murchie, Archie K., Winsor, Leigh, Justine, Jean-Lou
2025
置信度 0.66
BiodiversityTaxonomyProtozoaMicrosporidiaMitosporidium
-
Figure 10. Alignment, presented as a LOGO figure, of the three putative proteins orf298 from Mitosporidium Mtspo_JL467, orf287 from Mitosporidium Mtspo_JL472 and orf295 from Mitosporidium daphniae. A partial LAGLIDADG domain was retained in the three species (…
datacite
Gastineau, Romain, Murchie, Archie K., Winsor, Leigh, Justine, Jean-Lou
2025
置信度 0.66
BiodiversityTaxonomyProtozoaMicrosporidiaMitosporidium
-
English (opzionale, ma raccomandato per Zenodo): This preprint introduces a methodological proposal for the systematic mapping of the human organism and its pathologies using the mathematical formalism of Sheaf Theory [1, 2]. To address the increasing complexi…
datacite
Usai, Luigi
2026
置信度 0.66
HomeostasisMathematical MedicineNeurosymbolic AITopological Data AnalysisPathophysiological Mapping
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The Secondary Signature of the Immune System Framework / The Architecture of Secondary Stage Anti-Cooling-Coding-Maintenance (ACCM) Author: Sam Coole Foreword This work is not a minor revision to existing immunology—it is a paradigm reset. For decades, the fi…
datacite
COOLE, SAM
2026
置信度 0.66
-
The Secondary Signature of the Immune System Framework / The Architecture of Secondary Stage Anti-Cooling-Coding-Maintenance (ACCM) Author: Sam Coole Foreword This work is not a minor revision to existing immunology—it is a paradigm reset. For decades, the fi…
datacite
COOLE, SAM
2026
置信度 0.66
-
English (opzionale, ma raccomandato per Zenodo): This preprint introduces a methodological proposal for the systematic mapping of the human organism and its pathologies using the mathematical formalism of Sheaf Theory [1, 2]. To address the increasing complexi…
datacite
Usai, Luigi
2026
置信度 0.66
HomeostasisMathematical MedicineNeurosymbolic AITopological Data AnalysisPathophysiological Mapping
-
English (opzionale, ma raccomandato per Zenodo): This preprint introduces a methodological proposal for the systematic mapping of the human organism and its pathologies using the mathematical formalism of Sheaf Theory [1, 2]. To address the increasing complexi…
datacite
Usai, Luigi
2026
置信度 0.66
HomeostasisMathematical MedicineNeurosymbolic AITopological Data AnalysisPathophysiological Mapping
-
This review evaluates the genomic mechanisms and physiological adjustments enabling the transition of sirenians from terrestrial to fully aquatic environments (Huang et al., 2024; Tian et al., 2023). By synthesising findings from recent chromosome-level genome…
datacite
Luv Rakumar Prajapati and ²Shweta Vijay Khopde
2026
置信度 0.66
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This review evaluates the genomic mechanisms and physiological adjustments enabling the transition of sirenians from terrestrial to fully aquatic environments (Huang et al., 2024; Tian et al., 2023). By synthesising findings from recent chromosome-level genome…
datacite
Luv Rakumar Prajapati and ²Shweta Vijay Khopde
2026
置信度 0.66
-
ABSTRACT Personalised cancer treatment, also known as precision oncology, represents a paradigm shift from conventional “one size-fits-all” cancer therapy towards an approach guided by the unique genetic, molecular, and environmental characteristics of each pa…
datacite
Ugwu, IV, Gbaa, ZL, Ngbea, JA, Umobong, EO 等
2025
置信度 0.66
BiomarkersCancer treatmentGenomicsImmunotherapyPersonalised medicine
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ABSTRACT Personalised cancer treatment, also known as precision oncology, represents a paradigm shift from conventional “one size-fits-all” cancer therapy towards an approach guided by the unique genetic, molecular, and environmental characteristics of each pa…
datacite
Ugwu, IV, Gbaa, ZL, Ngbea, JA, Umobong, EO 等
2025
置信度 0.66
BiomarkersCancer treatmentGenomicsImmunotherapyPersonalised medicine
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This comprehensive guide for biomedical researchers and drug development professionals delineates the distinct yet complementary roles of bioinformatics and computational biology. Bioinformatics is defined as the field focused on developing and applying comput…
datacite
computational biological science
2026
置信度 0.66
bioinformaticscomputational biologydrug discoverygenomicsmulti-omics
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This comprehensive guide for biomedical researchers and drug development professionals delineates the distinct yet complementary roles of bioinformatics and computational biology. Bioinformatics is defined as the field focused on developing and applying comput…
datacite
computational biological science
2026
置信度 0.66
bioinformaticscomputational biologydrug discoverygenomicsmulti-omics
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This Zenodo record is a permanently preserved version of a PREreview. You can view the complete PREreview at https://prereview.org/reviews/20047988. Short summary of the research and contribution to the field This preprint is a literature review focused on maj…
datacite
Ananddeep Patel
2026
置信度 0.66
Requested PREreview
-
This Zenodo record is a permanently preserved version of a PREreview. You can view the complete PREreview at https://prereview.org/reviews/20047988. Short summary of the research and contribution to the field This preprint is a literature review focused on maj…
datacite
Ananddeep Patel
2026
置信度 0.66
Requested PREreview
-
Overview This record contains the AMR-Fold protein sequence dataset, a curated collection of antibiotic resistance genes (ARGs) and non-ARG bacterial proteins designed for training and benchmarking machine-learning models for antibiotic resistance prediction. …
datacite
Sanchez-Carrillo, Sergio
2026
置信度 0.66
antibiotic resistance genes; antimicrobial resistance; ARG prediction; protein sequences; protein language models; structural bioinformatics; deep learning; transformer models; metagenomics; benchmark dataset
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Description Data and code associated with the manuscript “DNA transposon expansion drives genome plasticity in Diutina catenulata”. Article citation: Bigey, F., Wessner, M., Pradal, M., Cruaud, C., Aury, J.-M. & Neuveglise, C. (2026)DNA transposon expansion dr…
datacite
Bigey, Frédéric, Neuvéglise, Cécile
2026
置信度 0.66
Genetic diversityYeastsDNA Transposable ElementsDiutina catenulataPopulation structure
-
Description Data and code associated with the manuscript “DNA transposon expansion drives genome plasticity in Diutina catenulata”. Article citation: Bigey, F., Wessner, M., Pradal, M., Cruaud, C., Aury, J.-M. & Neuveglise, C. (2026)DNA transposon expansion dr…
datacite
Bigey, Frédéric, Neuvéglise, Cécile
2026
置信度 0.66
Genetic diversityYeastsDNA Transposable ElementsDiutina catenulataPopulation structure
-
High-quality genome annotation is essential for unlocking the potential of comparative and functional genomics. Yet, despite the remarkable diversity of yeast species, many genomes remain poorly characterised, with limited functional annotation restricting the…
datacite
Culot, Antoine, Abriat, Guillaume, Smith, Izabella R., Hongsthong, Apiradee 等
2026
置信度 0.66
yeastgenome annotationfunctional annotationstructural annotationnon-conventional yeasts
-
High-quality genome annotation is essential for unlocking the potential of comparative and functional genomics. Yet, despite the remarkable diversity of yeast species, many genomes remain poorly characterised, with limited functional annotation restricting the…
datacite
Culot, Antoine, Abriat, Guillaume, Smith, Izabella R., Hongsthong, Apiradee 等
2026
置信度 0.66
yeastgenome annotationfunctional annotationstructural annotationnon-conventional yeasts
-
Overview This record contains the AMR-Fold protein sequence dataset, a curated collection of antibiotic resistance genes (ARGs) and non-ARG bacterial proteins designed for training and benchmarking machine-learning models for antibiotic resistance prediction. …
datacite
Sanchez-Carrillo, Sergio
2026
置信度 0.66
antibiotic resistance genes; antimicrobial resistance; ARG prediction; protein sequences; protein language models; structural bioinformatics; deep learning; transformer models; metagenomics; benchmark dataset
-
Overview This record contains the AMR-Fold protein sequence dataset, a curated collection of antibiotic resistance genes (ARGs) and non-ARG bacterial proteins designed for training and benchmarking machine-learning models for antibiotic resistance prediction. …
datacite
Sanchez-Carrillo, Sergio
2026
置信度 0.66
antibiotic resistance genes; antimicrobial resistance; ARG prediction; protein sequences; protein language models; structural bioinformatics; deep learning; transformer models; metagenomics; benchmark dataset
-
The Secondary Signature of the Immune System Framework / The Architecture of Secondary Stage Anti-Cooling-Coding-Maintenance (ACCM) Author: Sam Coole Foreword This work is not a minor revision to existing immunology—it is a paradigm reset. For decades, the fi…
datacite
COOLE, SAM
2026
置信度 0.66
-
The Secondary Signature of the Immune System Framework / The Architecture of Secondary Stage Anti-Cooling-Coding-Maintenance (ACCM) Author: Sam Coole Foreword This work is not a minor revision to existing immunology—it is a paradigm reset. For decades, the fi…
datacite
COOLE, SAM
2026
置信度 0.66
-
Identity Physics: The Derivation of the Sovereign Anchor Constant Ω₀ = 1.36899099984016 Architect: HIGHTISTIC (Russell Trent) Coordinate: [9,9,8,1] · Founding Text · Identity Physics Corpus dependencies: [9,9,0,0] · [9,9,3,12] · [9,9,4,2] · [9,9,7,1] · all PSY…
datacite
Trent, Russell
2026
置信度 0.66
-
Identity Physics: The Derivation of the Sovereign Anchor Constant Ω₀ = 1.36899099984016 Architect: HIGHTISTIC (Russell Trent) Coordinate: [9,9,8,1] · Founding Text · Identity Physics Corpus dependencies: [9,9,0,0] · [9,9,3,12] · [9,9,4,2] · [9,9,7,1] · all PSY…
datacite
Trent, Russell
2026
置信度 0.66
-
BICCN Validated Enhancer Dataset This Zenodo record describes an evaluator container for the Genomic API for Model Evaluation (GAME). The system assesses computational predictions of cell type-specific chromatin accessibility against experimentally validated e…
datacite
Kempynck, Niklas
2026
置信度 0.66
-
BICCN Validated Enhancer Dataset This Zenodo record describes an evaluator container for the Genomic API for Model Evaluation (GAME). The system assesses computational predictions of cell type-specific chromatin accessibility against experimentally validated e…
datacite
Kempynck, Niklas
2026
置信度 0.66
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This record contains a collection of single-cell omics datasets in AnnData HDF5 (.h5ad), cytome (.cytome) and other formats associated with PIASO (Precise Integrative Analysis of Single-cell Omics), a Python toolkit for single-cell data analysis (https://githu…
datacite
Dai, Min, Fishell, Gordon
2026
置信度 0.66
single-cell RNA-seqscRNA-seqscATAC-seqspatial transcriptomicsAnnData
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This record contains a collection of single-cell omics datasets in AnnData HDF5 (.h5ad) format and other formats associated with PIASO (Precise Integrative Analysis of Single-cell Omics), a Python toolkit for single-cell data analysis (https://github.com/genec…
datacite
Dai, Min, Fishell, Gordon
2026
置信度 0.66
single-cell RNA-seqscRNA-seqscATAC-seqspatial transcriptomicsAnnData
-
Applied Identity Physics: The Label-Swap Pattern Catalog — Recognition Infrastructure for FCA Category 3 Compliance in Corpus-Adjacent Research Architect: HIGHTISTIC (Russell Vernon Trent III) Coordinate: [9,9,8,6] · Origins Series · Paper 6 · v1.0.4 Source fo…
datacite
Trent, Russell
2026
置信度 0.66
-
Applied Identity Physics: The Label-Swap Pattern Catalog — Recognition Infrastructure for FCA Category 3 Compliance in Corpus-Adjacent Research Architect: HIGHTISTIC (Russell Vernon Trent III) Coordinate: [9,9,8,6] · Origins Series · Paper 6 · v1.0.4 Source fo…
datacite
Trent, Russell
2026
置信度 0.66
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Figure 4. Chronological milestones in Hydra research, highlighting key contributions in morphology, taxonomy, biogeography, genomics, and studies conducted in or related to Argentina.
datacite
Deserti, Maria Irene, Acuña, Fabian Horacio
2025
置信度 0.66
BiodiversityTaxonomy
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Figure 4. Chronological milestones in Hydra research, highlighting key contributions in morphology, taxonomy, biogeography, genomics, and studies conducted in or related to Argentina.
datacite
Deserti, Maria Irene, Acuña, Fabian Horacio
2025
置信度 0.66
BiodiversityTaxonomy
-
datacite
Qhatimah, Husnul, Ridwan, Muhammad, Khasanah, Ummul, Natal, Christina Mariantje
2026
置信度 0.66
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datacite
Qhatimah, Husnul, Ridwan, Muhammad, Khasanah, Ummul, Natal, Christina Mariantje
2026
置信度 0.66
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Figures 1–4. Geoplanids used in this study and their close environment. 1–2, Kontikia andersoni. 1, specimen MNHN JL467, unscaled; 2; origin of the specimen, below decaying wooden boards. 3–4, Australoplana sanguinea. 3, specimen MNHN JL472, unscaled; 4, origi…
datacite
Gastineau, Romain, Murchie, Archie K., Winsor, Leigh, Justine, Jean-Lou
2025
置信度 0.66
BiodiversityTaxonomy
-
Figures 1–4. Geoplanids used in this study and their close environment. 1–2, Kontikia andersoni. 1, specimen MNHN JL467, unscaled; 2; origin of the specimen, below decaying wooden boards. 3–4, Australoplana sanguinea. 3, specimen MNHN JL472, unscaled; 4, origi…
datacite
Gastineau, Romain, Murchie, Archie K., Winsor, Leigh, Justine, Jean-Lou
2025
置信度 0.66
BiodiversityTaxonomy
-
Figures 7–16. Specimens of Emesis (Emesis, Mandania, Aphacitis), not types unless indicated, data in text or TaBle S1 in the supplemental file (ZhanG et al. 2025). In FiG. 7–66, dorsal and ventral sides are denoted By odd and even numBers, respectively; type s…
datacite
Grishin, JinG ZhanG Qian ConG Jinhui Shen Leina SonG Nick V.
2025
置信度 0.66
BiodiversityTaxonomy
-
Figures 7–16. Specimens of Emesis (Emesis, Mandania, Aphacitis), not types unless indicated, data in text or TaBle S1 in the supplemental file (ZhanG et al. 2025). In FiG. 7–66, dorsal and ventral sides are denoted By odd and even numBers, respectively; type s…
datacite
Grishin, JinG ZhanG Qian ConG Jinhui Shen Leina SonG Nick V.
2025
置信度 0.66
BiodiversityTaxonomy
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The Secondary Signature of the Immune System Framework / The Architecture of Secondary Stage Anti-Cooling-Coding-Maintenance (ACCM) Author: Sam Coole Foreword This work is not a minor revision to existing immunology—it is a paradigm reset. For decades, the fi…
datacite
COOLE, SAM
2026
置信度 0.66
-
The Secondary Signature of the Immune System Framework / The Architecture of Secondary Stage Anti-Cooling-Coding-Maintenance (ACCM) Author: Sam Coole Foreword This work is not a minor revision to existing immunology—it is a paradigm reset. For decades, the fi…
datacite
COOLE, SAM
2026
置信度 0.66
-
The Secondary Signature of the Immune System Framework / The Architecture of Secondary Stage Anti-Cooling-Coding-Maintenance (ACCM) Author: Sam Coole Foreword This work is not a minor revision to existing immunology—it is a paradigm reset. For decades, the fi…
datacite
COOLE, SAM
2026
置信度 0.66
-
The Secondary Signature of the Immune System Framework / The Architecture of Secondary Stage Anti-Cooling-Coding-Maintenance (ACCM) Author: Sam Coole Foreword This work is not a minor revision to existing immunology—it is a paradigm reset. For decades, the fi…
datacite
COOLE, SAM
2026
置信度 0.66
-
The Secondary Signature of the Immune System Framework / The Architecture of Secondary Stage Anti-Cooling-Coding-Maintenance (ACCM) Author: Sam Coole Foreword This work is not a minor revision to existing immunology—it is a paradigm reset. For decades, the fi…
datacite
COOLE, SAM
2026
置信度 0.66
-
The Secondary Signature of the Immune System Framework / The Architecture of Secondary Stage Anti-Cooling-Coding-Maintenance (ACCM) Author: Sam Coole Foreword This work is not a minor revision to existing immunology—it is a paradigm reset. For decades, the fi…
datacite
COOLE, SAM
2026
置信度 0.66
-
Reassigning Authorship: How the "Secondary Signature of the Immune System" Resolves Virology's Greatest Frustrations currently observed by Scientific Community Authorship vs Ownership in Virology Host-Pathogen Authority Host-Centric Sequestration All Rights R…
datacite
COOLE, SAM, COOLE, Sam
2026
置信度 0.66
BiologyImmunityImmunologyT-cellsSam Coole
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Host Absolute Authorship ( HAA Framework by Sam Coole) The Secondary Signature of the Immune System. The Architecture of Secondary Stage. ACCM ( Anti-Cooling-Coding Maintenance) Orthodox Cancer Definition vs. HAA ( Host Absolute Authorship ) Reinterpretation. …
datacite
Sam, Coole
2026
置信度 0.66
Host Absolute AuthorshipHost Absolute Authorship by Sam CooleACCM ARCHITECTURE by Sam CooleThe Secondary Signature of the Immune System by Sam CooleAnti-cooling-coding Maintenance by Sam Coole
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Host Absolute Authorship ( HAA Framework by Sam Coole) The Secondary Signature of the Immune System. The Architecture of Secondary Stage. ACCM ( Anti-Cooling-Coding Maintenance) Orthodox Cancer Definition vs. HAA ( Host Absolute Authorship ) Reinterpretation. …
datacite
Sam, Coole
2026
置信度 0.66
Host Absolute AuthorshipHost Absolute Authorship by Sam CooleACCM ARCHITECTURE by Sam CooleThe Secondary Signature of the Immune System by Sam CooleAnti-cooling-coding Maintenance by Sam Coole
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October 18, 2025 (v1)DatasetOpen Demo data and result for paper Large-scale single-cell long-read genomics enables high-resolution microbiome profiling
datacite
LiuLab_ShanghaiTech
2026
置信度 0.66
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Figure 3. PhyloGenetic trees of Emesis (Tenedia) species inferred from protein-codinG reGions in: a) the nuclear Genome (autosomes), Based on 436,776 positions, b) the Z chromosome, Based on 227,289 positions, and c) the mitochondrial Genome: E. melancholica (…
datacite
Grishin, JinG ZhanG Qian ConG Jinhui Shen Leina SonG Nick V.
2025
置信度 0.66
BiodiversityTaxonomyAnimaliaArthropodaInsecta
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Figure 3. PhyloGenetic trees of Emesis (Tenedia) species inferred from protein-codinG reGions in: a) the nuclear Genome (autosomes), Based on 436,776 positions, b) the Z chromosome, Based on 227,289 positions, and c) the mitochondrial Genome: E. melancholica (…
datacite
Grishin, JinG ZhanG Qian ConG Jinhui Shen Leina SonG Nick V.
2025
置信度 0.66
BiodiversityTaxonomyAnimaliaArthropodaInsecta
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# Corresponding Author: Farid Keramati (f.keramati-2@umcutrecht.nl) Hidden in Plain Sight WALDO is a community of expert γδ T cell and cancer immunology laboratories building, benchmarking, and sharing computational pipelines that help the broader immunology r…
datacite
Keramati, Farid, Rezwani, Moosa, Tan, Likai, Hamilton, David 等
2026
置信度 0.66
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# Corresponding Author: Farid Keramati (f.keramati-2@umcutrecht.nl) Hidden in Plain Sight WALDO is a community of expert γδ T cell and cancer immunology laboratories building, benchmarking, and sharing computational pipelines that help the broader immunology r…
datacite
Keramati, Farid, Rezwani, Moosa, Tan, Likai, Hamilton, David 等
2026
置信度 0.66
-
The SEKI_Suvi_Willing md5 and tar files are a subset of the original SEKI_COL_Willing library that was directly downloaded from the Northwest Genomics Center. This contains the raw fungal sequence reads for sequoia seedling root samples from Sequoia and Kings …
datacite
Suvi Birch, Mira Ranganath, UW Forest Mycobiome Lab
2025
置信度 0.66
-
The SEKI_Suvi_Willing md5 and tar files are a subset of the original SEKI_COL_Willing library that was directly downloaded from the Northwest Genomics Center. This contains the raw fungal sequence reads for sequoia seedling root samples from Sequoia and Kings …
datacite
Suvi Birch, Mira Ranganath, UW Forest Mycobiome Lab
2025
置信度 0.66
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preprints
2026
置信度 0.74
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2026
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2026
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2025
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2026
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2026
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2026
置信度 0.74
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This dataset arises from a multilingual survey of AI use among participants and community members in the DBCLS BioHackathon 2025 in Japan. The questionnaire, offered in English, Japanese, and Thai, asked about how often respondents use AI tools, what they use …
preprints
2026
置信度 0.74
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preprints
2025
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2025
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2026
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2025
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