生物计算

9416 条实体 · 最后更新 2026-10-16T09:46:20.862Z · Bioinform. / Computer science / Plug-in / Biological network / Intersection (aeronautics) / Cluster analysis / Mega- / Emulation / Biology / Software / Virtualization / X-ray

• Unique Down to Our Microbes—Assessment of an Inquiry-Based Metagenomics Activity
  openalex 2017 置信度 0.70 Genetics, Bioinformatics, and Biomedical ResearchScientific Computing and Data ManagementGenomics and Phylogenetic Studies
• ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference
  openalex 2020 置信度 0.70 Genomics and Phylogenetic StudiesGenetic diversity and population structureEvolution and Paleontology Studies
• The nf-core framework for community-curated bioinformatics pipelines
  openalex 2020 置信度 0.70 Scientific Computing and Data ManagementGenetics, Bioinformatics, and Biomedical ResearchResearch Data Management Practices
• Porechop_ABI: discovering unknown adapters in Oxford Nanopore Technology sequencing reads for downstream trimming
  openalex 2022 置信度 0.70 Genomics and Phylogenetic StudiesGene expression and cancer classificationGenomics and Rare Diseases
• TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data
  openalex 2020 置信度 0.70 Genomics and Phylogenetic StudiesBioinformatics and Genomic NetworksAdvanced Proteomics Techniques and Applications
• CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets
  openalex 2016 置信度 0.70 Cell Image Analysis TechniquesSingle-cell and spatial transcriptomicsDigital Imaging for Blood Diseases
• Resolving cellular dynamics using single-cell temporal transcriptomics
  openalex 2024 置信度 0.70 Single-cell and spatial transcriptomicsGene Regulatory Network AnalysisCell Image Analysis Techniques
• Large-scale monoclonal antibody purification by continuous chromatography, from process design to scale-up
  openalex 2015 置信度 0.70 Protein purification and stabilityMonoclonal and Polyclonal Antibodies ResearchViral Infectious Diseases and Gene Expression in Insects
• Multi-agent simulated annealing algorithm with parallel adaptive multiple sampling for protein structure prediction in AB off-lattice model
  openalex 2017 置信度 0.70 Machine Learning in BioinformaticsGenomics and Phylogenetic StudiesGene expression and cancer classification
• A comparison of single-cell trajectory inference methods
  openalex 2019 置信度 0.70 Single-cell and spatial transcriptomicsGene expression and cancer classificationGenomics and Chromatin Dynamics
• Biopython
  openalex 2000 置信度 0.70 Genetics, Bioinformatics, and Biomedical ResearchCell Image Analysis Techniques
• Digitalized organoids: integrated pipeline for high-speed 3D analysis of organoid structures using multilevel segmentation and cellular topology
  openalex 2025 置信度 0.70 Cell Image Analysis Techniques3D Printing in Biomedical ResearchCancer Cells and Metastasis
• Computing in mammalian cells with nucleic acid strand exchange
  openalex 2015 置信度 0.70 Advanced biosensing and bioanalysis techniquesRNA Interference and Gene DeliveryDNA and Nucleic Acid Chemistry
• Principal Component Analysis: A Method for Determining the Essential Dynamics of Proteins
  openalex 2013 置信度 0.70 Protein Structure and DynamicsMolecular spectroscopy and chiralityRNA and protein synthesis mechanisms
• Finding recurrent RNA structural networks with fast maximal common subgraphs of edge-colored graphs
  openalex 2021 置信度 0.70 RNA and protein synthesis mechanismsRNA modifications and cancerGenomics and Phylogenetic Studies
• MultiVI: deep generative model for the integration of multi-modal data
  openalex 2021 置信度 0.70 Single-cell and spatial transcriptomicsCell Image Analysis TechniquesGenomics and Chromatin Dynamics
• COBRApy: COnstraints-Based Reconstruction and Analysis for Python
  openalex 2013 置信度 0.70 Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic NetworksGene Regulatory Network Analysis
• Image-based cell profiling enhancement via data cleaning methods
  openalex 2022 置信度 0.70 Cell Image Analysis TechniquesImage Processing Techniques and ApplicationsAdvanced Fluorescence Microscopy Techniques
• Primer3—new capabilities and interfaces
  openalex 2012 置信度 0.70 Software Testing and Debugging Techniques
• Reducing the computational load of energy evaluations for protein folding
  openalex 2004 置信度 0.70 Protein Structure and DynamicsAlgorithms and Data CompressionGenomics and Chromatin Dynamics
• Cellpose: a generalist algorithm for cellular segmentation
  openalex 2020 置信度 0.70 Cell Image Analysis TechniquesImage Processing Techniques and ApplicationsSingle-cell and spatial transcriptomics
• A simple method to control over-alignment in the MAFFT multiple sequence alignment program
  openalex 2016 置信度 0.70 Genomics and Phylogenetic StudiesProtein Structure and DynamicsEnzyme Structure and Function
• Docking of protein molecular surfaces with evolutionary trace analysis
  openalex 2007 置信度 0.70 RNA and protein synthesis mechanismsProtein Structure and DynamicsMachine Learning in Bioinformatics
• Comparison of Approaches for Determining Bioactivity Hits from High-Dimensional Profiling Data
  openalex 2020 置信度 0.70 Cell Image Analysis TechniquesComputational Drug Discovery MethodsViral Infectious Diseases and Gene Expression in Insects
• MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights
  openalex 2021 置信度 0.70 Metabolomics and Mass Spectrometry StudiesGut microbiota and healthBioinformatics and Genomic Networks
• Understanding network concepts in modules
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• Benchmark problems for dynamic modeling of intracellular processes
  openalex 2019 置信度 0.70 Gene Regulatory Network AnalysisMicrobial Metabolic Engineering and BioproductionGene expression and cancer classification
• Bayesian cell therapy process optimization
  openalex 2024 置信度 0.70 Advanced Multi-Objective Optimization AlgorithmsOptimal Experimental Design MethodsViral Infectious Diseases and Gene Expression in Insects
• Identification of common molecular subsequences
  openalex 1981 置信度 0.70 Quantum Computing Algorithms and ArchitectureAlgorithms and Data CompressionError Correcting Code Techniques
• VisANT: data-integrating visual framework for biological networks and modules
  openalex 2005 置信度 0.70 Bioinformatics and Genomic NetworksGene Regulatory Network AnalysisMicrobial Metabolic Engineering and Bioproduction
• Complex heatmap visualization
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• The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks
  openalex 2006 置信度 0.70 Bioinformatics and Genomic NetworksCell Image Analysis TechniquesSingle-cell and spatial transcriptomics
• FLASH: fast length adjustment of short reads to improve genome assemblies
  openalex 2011 置信度 0.70 Genomics and Phylogenetic StudiesGenome Rearrangement AlgorithmsBacteriophages and microbial interactions
• Basic local alignment search tool
  openalex 1990 置信度 0.70 Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsGenomics and Chromatin Dynamics
• KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
  openalex 2016 置信度 0.70 Genomics and Phylogenetic StudiesBacteriophages and microbial interactionsGenomics and Rare Diseases
• ADEMO/D: An adaptive differential evolution for protein structure prediction problem
  openalex 2016 置信度 0.70 Advanced Multi-Objective Optimization AlgorithmsMetaheuristic Optimization Algorithms ResearchEvolutionary Algorithms and Applications
• Cobolt: integrative analysis of multimodal single-cell sequencing data
  openalex 2021 置信度 0.70 Single-cell and spatial transcriptomicsCancer Genomics and DiagnosticsRNA modifications and cancer
• The Quantified Self: Fundamental Disruption in Big Data Science and Biological Discovery
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• Multi-Omics Approaches and Resources for Systems-Level Gene Function Prediction in the Plant Kingdom
  openalex 2022 置信度 0.70 Bioinformatics and Genomic NetworksGenomics and Phylogenetic StudiesMicrobial Metabolic Engineering and Bioproduction
• Applications in image-based profiling of perturbations
  openalex 2016 置信度 0.70 Cell Image Analysis TechniquesGenetics, Bioinformatics, and Biomedical ResearchAdvanced Fluorescence Microscopy Techniques
• Building synthetic gene circuits from combinatorial libraries: screening and selection strategies
  openalex 2013 置信度 0.70 CRISPR and Genetic EngineeringRNA and protein synthesis mechanismsMonoclonal and Polyclonal Antibodies Research
• Identification of hot-spot residues in protein-protein interactions by computational docking
  openalex 2008 置信度 0.70 Protein Structure and DynamicsHeat shock proteins research14-3-3 protein interactions
• MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
  openalex 2013 置信度 0.70 Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsBacterial Genetics and Biotechnology
• Machine and deep learning meet genome-scale metabolic modeling
  openalex 2019 置信度 0.70 Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic NetworksGene Regulatory Network Analysis
• Quality control and analytical methods for baculovirus-based products
  openalex 2011 置信度 0.70 Viral Infectious Diseases and Gene Expression in InsectsProtein purification and stability3D Printing in Biomedical Research
• SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules
  openalex 2019 置信度 0.70 Computational Drug Discovery MethodsMicrobial Natural Products and BiosynthesisProtein Structure and Dynamics
• Brieflow: An Integrated Computational Pipeline for High-Throughput Analysis of Optical Pooled Screening Data
  openalex 2025 置信度 0.70 Cell Image Analysis TechniquesSingle-cell and spatial transcriptomicsGenetics, Bioinformatics, and Biomedical Research
• Sequencing DNA with nanopores: Troubles and biases
  openalex 2021 置信度 0.70 Genomics and Phylogenetic StudiesMolecular Biology Techniques and ApplicationsRNA and protein synthesis mechanisms
• Speed up differential evolution for computationally expensive protein structure prediction problems
  openalex 2019 置信度 0.70 Evolutionary Algorithms and ApplicationsMetaheuristic Optimization Algorithms ResearchAdvanced Multi-Objective Optimization Algorithms
• Evaluating batch correction methods for image-based cell profiling
  openalex 2024 置信度 0.70 Single-cell and spatial transcriptomicsCell Image Analysis TechniquesMicrofluidic and Bio-sensing Technologies
• Capture-C: a modular and flexible approach for high-resolution chromosome conformation capture
  openalex 2022 置信度 0.70 Genomics and Chromatin DynamicsChromosomal and Genetic VariationsRNA and protein synthesis mechanisms
• SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling
  openalex 1997 置信度 0.70 Protein Structure and DynamicsEnzyme Structure and FunctionBacterial Genetics and Biotechnology
• Incorporating Pathway Information into Feature Selection towards Better Performed Gene Signatures
  openalex 2019 置信度 0.70 Bioinformatics and Genomic NetworksGene expression and cancer classificationComputational Drug Discovery Methods
• Unraveling hot spots in binding interfaces: progress and challenges
  openalex 2002 置信度 0.70 Protein Structure and DynamicsComputational Drug Discovery MethodsMass Spectrometry Techniques and Applications
• Lymphocyte expansion in bioreactors: upgrading adoptive cell therapy
  openalex 2021 置信度 0.70 CAR-T cell therapy researchPluripotent Stem Cells ResearchHematopoietic Stem Cell Transplantation
• Bio-inspired control of automated stem cell production
  openalex 2020 置信度 0.70 3D Printing in Biomedical ResearchDigital Transformation in IndustryBiomedical and Engineering Education
• Improvements to the Percolator Algorithm for Peptide Identification from Shotgun Proteomics Data Sets
  openalex 2009 置信度 0.70 Advanced Proteomics Techniques and ApplicationsMachine Learning in BioinformaticsMass Spectrometry Techniques and Applications
• AnnoPRO: a strategy for protein function annotation based on multi-scale protein representation and a hybrid deep learning of dual-path encoding
  openalex 2024 置信度 0.70 Machine Learning in BioinformaticsRNA and protein synthesis mechanismsGenomics and Phylogenetic Studies
• A Universally Unique IDentifier (UUID) URN Namespace
  openalex 2005 置信度 0.70 Distributed and Parallel Computing SystemsAdvanced Data Storage TechnologiesDistributed systems and fault tolerance
• Fast gene set enrichment analysis
  openalex 2016 置信度 0.70 Bioinformatics and Genomic NetworksGene expression and cancer classificationGene Regulatory Network Analysis
• Advances in enhanced biological phosphorus removal: From micro to macro scale
  openalex 2007 置信度 0.70 Wastewater Treatment and Nitrogen RemovalPhosphorus and nutrient managementConstructed Wetlands for Wastewater Treatment
• Approximately independent linkage disequilibrium blocks in human populations
  openalex 2015 置信度 0.70 RNA modifications and cancerGenetic Associations and EpidemiologyRNA Research and Splicing
• Modern Sensor Tools and Techniques for Monitoring, Controlling, and Improving Cell Culture Processes
  openalex 2022 置信度 0.70 Viral Infectious Diseases and Gene Expression in InsectsProtein purification and stabilitythermodynamics and calorimetric analyses
• ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers
  openalex 2014 置信度 0.70 vaccines and immunoinformatics approachesProtein Structure and DynamicsBioinformatics and Genomic Networks
• Functional phenomics: an emerging field integrating high-throughput phenotyping, physiology, and bioinformatics
  openalex 2018 置信度 0.70 Genetic Mapping and Diversity in Plants and AnimalsRemote Sensing in AgriculturePlant and animal studies
• clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
  openalex 2012 置信度 0.70 Bioinformatics and Genomic NetworksGene expression and cancer classificationMachine Learning in Bioinformatics
• The SWISS-MODEL Repository and associated resources
  openalex 2008 置信度 0.70 Enzyme Structure and FunctionProtein Structure and DynamicsGenomics and Phylogenetic Studies
• Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search
  openalex 2022 置信度 0.70 Protein Structure and DynamicsEnzyme Structure and FunctionRNA and protein synthesis mechanisms
• Methods for the detection and assembly of novel sequence in high-throughput sequencing data
  openalex 2015 置信度 0.70 Genomics and Phylogenetic StudiesGenomics and Rare DiseasesBiomedical Text Mining and Ontologies
• The BRENDA enzyme information system–From a database to an expert system
  openalex 2017 置信度 0.70 Microbial Metabolic Engineering and BioproductionEnzyme Structure and FunctionAdvanced Proteomics Techniques and Applications
• The future of phenotypic drug discovery
  openalex 2021 置信度 0.70 Cell Image Analysis TechniquesComputational Drug Discovery MethodsSingle-cell and spatial transcriptomics
• Class-Guided Image-to-Image Diffusion: Cell Painting from Brightfield Images with Class Labels
  openalex 2023 置信度 0.70 Cell Image Analysis TechniquesImage Processing Techniques and ApplicationsSingle-cell and spatial transcriptomics
• Noise and Epigenetic Inheritance of Single-Cell Division Times Influence Population Fitness
  openalex 2016 置信度 0.70 Gene Regulatory Network AnalysisSingle-cell and spatial transcriptomicsEvolution and Genetic Dynamics
• Data-analysis strategies for image-based cell profiling
  openalex 2017 置信度 0.70 Cell Image Analysis TechniquesSingle-cell and spatial transcriptomicsImage Processing Techniques and Applications
• Correlation Imputation for Single-Cell RNA-seq
  openalex 2022 置信度 0.70 Single-cell and spatial transcriptomicsGene expression and cancer classificationStatistical Methods and Inference
• ModelFinder: fast model selection for accurate phylogenetic estimates
  openalex 2017 置信度 0.70 Evolution and Paleontology StudiesGenomics and Phylogenetic StudiesGenetic diversity and population structure
• A systems-theoretic approach to hazard identification of marine systems with dynamic autonomy
  openalex 2020 置信度 0.70 Risk and Safety AnalysisOccupational Health and Safety ResearchMaritime Navigation and Safety
• Protein structure alignment
  openalex 1989 置信度 0.70 Protein Structure and DynamicsEnzyme Structure and FunctionRNA and protein synthesis mechanisms
• Performance and Its Limits in Rigid Body Protein-Protein Docking
  openalex 2020 置信度 0.70 Protein Structure and DynamicsTransgenic Plants and ApplicationsProtein purification and stability
• ChromHMM: automating chromatin-state discovery and characterization
  openalex 2012 置信度 0.70 Genomics and Chromatin DynamicsGene expression and cancer classificationBioinformatics and Genomic Networks
• Kinetic modeling: A tool for temperature shift and feeding optimization in cell culture process development
  openalex 2022 置信度 0.70 Viral Infectious Diseases and Gene Expression in InsectsProtein purification and stabilityMicrobial Metabolic Engineering and Bioproduction
• Data science in cell imaging
  openalex 2021 置信度 0.70 Cell Image Analysis TechniquesGenetics, Bioinformatics, and Biomedical ResearchSingle-cell and spatial transcriptomics
• High-dimensional gene expression and morphology profiles of cells across 28,000 genetic and chemical perturbations
  openalex 2022 置信度 0.70 Cell Image Analysis TechniquesSingle-cell and spatial transcriptomicsGene expression and cancer classification
• Biological function in the twilight zone of sequence conservation
  openalex 2017 置信度 0.70 Genetic diversity and population structureGenomics and Phylogenetic StudiesChromosomal and Genetic Variations
• Image-based multivariate profiling of drug responses from single cells
  openalex 2007 置信度 0.70 Cell Image Analysis TechniquesSingle-cell and spatial transcriptomicsAdvanced Fluorescence Microscopy Techniques
• WGSA: an annotation pipeline for human genome sequencing studies
  openalex 2015 置信度 0.70 Genomics and Rare DiseasesGenomics and Phylogenetic StudiesRNA modifications and cancer
• Computation for ChIP-seq and RNA-seq studies
  openalex 2009 置信度 0.70 RNA modifications and cancerGenomics and Phylogenetic StudiesRNA Research and Splicing
• JUMP Cell Painting dataset: morphological impact of 136,000 chemical and genetic perturbations
  openalex 2023 置信度 0.70 Cell Image Analysis TechniquesSingle-cell and spatial transcriptomics3D Printing in Biomedical Research
• Multi-omics integration in biomedical research – A metabolomics-centric review
  openalex 2020 置信度 0.70 Bioinformatics and Genomic NetworksMetabolomics and Mass Spectrometry StudiesMicrobial Metabolic Engineering and Bioproduction
• A deoxyribozyme-based molecular automaton
  openalex 2003 置信度 0.70 Protein Structure and DynamicsReceptor Mechanisms and SignalingProtein Degradation and Inhibitors
• Advances in single-cell omics and multiomics for high-resolution molecular profiling
  openalex 2024 置信度 0.70 Single-cell and spatial transcriptomicsGene expression and cancer classificationGene Regulatory Network Analysis
• Secondary structure prediction: combination of three different methods
  openalex 1988 置信度 0.70 Chemical Synthesis and AnalysisRNA and protein synthesis mechanismsComputational Drug Discovery Methods
• Harvest scheduling algorithm to equalize supplier benefits: A case study from the Thai sugar cane industry
  openalex 2014 置信度 0.70 Sugarcane Cultivation and ProcessingNatural Products and Biological ResearchBiofuel production and bioconversion
• HelixFold: An Efficient Implementation of AlphaFold2 using PaddlePaddle
  openalex 2022 置信度 0.70 Machine Learning in BioinformaticsProtein Structure and DynamicsEnzyme Structure and Function
• Cutadapt removes adapter sequences from high-throughput sequencing reads
  openalex 2011 置信度 0.70 Genomics and Phylogenetic StudiesRNA modifications and cancerRNA and protein synthesis mechanisms
• chimeraviz: a tool for visualizing chimeric RNA
  openalex 2017 置信度 0.70 Genomics and Phylogenetic StudiesRNA Research and SplicingRNA and protein synthesis mechanisms
• PxBLAT: an efficient python binding library for BLAT
  openalex 2024 置信度 0.70 Genomics and Phylogenetic StudiesScientific Computing and Data ManagementGenetics, Bioinformatics, and Biomedical Research
• Identification of Morphological Biosignatures in Martian Analogue Field Specimens Using In Situ Planetary Instrumentation
  openalex 2008 置信度 0.70 Planetary Science and ExplorationSpaceflight effects on biologySpace Exploration and Technology
• Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades
  openalex 2011 置信度 0.70 DNA and Biological ComputingAdvanced biosensing and bioanalysis techniquesDNA and Nucleic Acid Chemistry
• Principles of genetic circuit design
  openalex 2014 置信度 0.70 CRISPR and Genetic EngineeringGene Regulatory Network AnalysisAdvanced biosensing and bioanalysis techniques
• Computational DNA Droplets Recognizing miRNA Sequence Inputs Based on Liquid–Liquid Phase Separation
  openalex 2022 置信度 0.70 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingModular Robots and Swarm Intelligence
• Aptamer Selection Technology and Recent Advances
  openalex 2015 置信度 0.70 Advanced biosensing and bioanalysis techniquesRNA Interference and Gene DeliveryBiosensors and Analytical Detection
• ViennaRNA Package 2.0
  openalex 2011 置信度 0.70 RNA and protein synthesis mechanismsOrigins and Evolution of LifeDNA and Nucleic Acid Chemistry
• Algorithmic Self-Assembly of DNA Sierpinski Triangles
  openalex 2004 置信度 0.70 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingModular Robots and Swarm Intelligence
• DNA-based matching of digital signals
  openalex 2004 置信度 0.70 DNA and Biological ComputingAdvanced biosensing and bioanalysis techniquesDNA and Nucleic Acid Chemistry
• SciPy 1.0: fundamental algorithms for scientific computing in Python
  openalex 2020 置信度 0.70 Computational Physics and Python ApplicationsScientific Computing and Data ManagementGenetics, Bioinformatics, and Biomedical Research
• The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
  openalex 2022 置信度 0.70 Scientific Computing and Data ManagementGenetics, Bioinformatics, and Biomedical ResearchResearch Data Management Practices
• HTSeq—a Python framework to work with high-throughput sequencing data
  openalex 2014 置信度 0.70 Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsGenomics and Rare Diseases
• ranger : A Fast Implementation of Random Forests for High Dimensional Data in C++ and R
  openalex 2017 置信度 0.70 Genetic Associations and EpidemiologyGene expression and cancer classificationStatistical Methods and Inference
• Fast gapped-read alignment with Bowtie 2
  openalex 2012 置信度 0.70 Genomics and Phylogenetic StudiesAlgorithms and Data CompressionRNA and protein synthesis mechanisms
• Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
  openalex 2016 置信度 0.70 Genomics and Phylogenetic StudiesGenomics and Chromatin DynamicsRNA and protein synthesis mechanisms
• Simple Neurite Tracer: open source software for reconstruction, visualization and analysis of neuronal processes
  openalex 2011 置信度 0.70 Cell Image Analysis TechniquesAdvanced Fluorescence Microscopy TechniquesAdvanced Electron Microscopy Techniques and Applications
• Software tools for automated transmission electron microscopy
  openalex 2019 置信度 0.70 Advanced Electron Microscopy Techniques and ApplicationsCell Image Analysis TechniquesAdvanced Fluorescence Microscopy Techniques
• Scripting-customised microscopy tools for Digital Micrograph™
  openalex 2005 置信度 0.70 Advanced Electron Microscopy Techniques and ApplicationsCell Image Analysis TechniquesAdvanced Data Storage Technologies
• Self-replication of complementary nucleotide-based oligomers
  openalex 1994 置信度 0.70 Origins and Evolution of LifeRNA and protein synthesis mechanismsDNA and Biological Computing
• Selective amplification by auto- and cross-catalysis in a replicating peptide system
  openalex 1998 置信度 0.70 Origins and Evolution of LifeChemical Synthesis and AnalysisDNA and Biological Computing
• Advances in Protein-Based Resistive Switching Memory: Fundamentals, Challenges, and Applications
  openalex 2025 置信度 0.70 Advanced Memory and Neural ComputingNeuroscience and Neural EngineeringAdvanced biosensing and bioanalysis techniques
• VMD: Visual molecular dynamics
  openalex 1996 置信度 0.70 Protein Structure and DynamicsMicrotubule and mitosis dynamicsEnzyme Structure and Function
• UCSF ChimeraX : Structure visualization for researchers, educators, and developers
  openalex 2020 置信度 0.70 Cell Image Analysis TechniquesScientific Computing and Data ManagementAdvanced Electron Microscopy Techniques and Applications
• MOTION – A Framework for Mixed-Protocol Multi-Party Computation
  openalex 2022 置信度 0.70 Cryptography and Data SecurityDNA and Biological ComputingDistributed systems and fault tolerance
• A method for obtaining digital signatures and public-key cryptosystems
  openalex 1978 置信度 0.70 Cryptography and Data SecurityChaos-based Image/Signal EncryptionDNA and Biological Computing
• Almost-optimal computational-basis-state transpositions
  openalex 2024 置信度 0.70 DNA and Biological ComputingQuantum Computing Algorithms and ArchitectureCellular Automata and Applications
• DNA nanomachines
  openalex 2007 置信度 0.70 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingDNA and Nucleic Acid Chemistry
• Integrated computer-aided engineering and design for DNA assemblies
  openalex 2021 置信度 0.70 Advanced biosensing and bioanalysis techniquesBacteriophages and microbial interactionsRNA Interference and Gene Delivery
• Logical computation using algorithmic self-assembly of DNA triple-crossover molecules
  openalex 2000 置信度 0.70 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingModular Robots and Swarm Intelligence
• DNA Logic Gates
  openalex 2004 置信度 0.70 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingDNA and Nucleic Acid Chemistry
• High-efficiency and integrable DNA arithmetic and logic system based on strand displacement synthesis
  openalex 2019 置信度 0.70 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingDNA and Nucleic Acid Chemistry
• Solving the SAT problem using a DNA computing algorithm based on ligase chain reaction
  openalex 2007 置信度 0.70 DNA and Biological ComputingAdvanced biosensing and bioanalysis techniquesModular Robots and Swarm Intelligence
• DNA computing: implementation of data flow logical operations
  openalex 2001 置信度 0.70 DNA and Biological ComputingAdvanced biosensing and bioanalysis techniquesModular Robots and Swarm Intelligence
• Biochemical Logic Circuits Based on DNA Combinatorial Displacement
  openalex 2020 置信度 0.70 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingDNA and Nucleic Acid Chemistry
• Solving mazes with single-molecule DNA navigators
  openalex 2018 置信度 0.70 Advanced biosensing and bioanalysis techniquesRNA Interference and Gene DeliveryPlasmonic and Surface Plasmon Research
• Fast and compact DNA logic circuits based on single-stranded gates using strand-displacing polymerase
  openalex 2019 置信度 0.70 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingBiosensors and Analytical Detection
• Renewable Time‐Responsive DNA Circuits
  openalex 2018 置信度 0.70 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingDNA and Nucleic Acid Chemistry
• DNA multi-bit non-volatile memory and bit-shifting operations using addressable electrode arrays and electric field-induced hybridization
  openalex 2018 置信度 0.70 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingModular Robots and Swarm Intelligence
• Design and Analysis of Compact DNA Strand Displacement Circuits for Analog Computation Using Autocatalytic Amplifiers
  openalex 2017 置信度 0.70 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingQuantum-Dot Cellular Automata
• Scale-up of industrial microbial processes
  openalex 2018 置信度 0.70 Viral Infectious Diseases and Gene Expression in InsectsMicrobial Metabolic Engineering and BioproductionMineral Processing and Grinding
• Industrial internet of things: What does it mean for the bioprocess industries?
  openalex 2023 置信度 0.70 Viral Infectious Diseases and Gene Expression in InsectsFault Detection and Control SystemsMineral Processing and Grinding
• Rapid prototyping of arbitrary 2D and 3D wireframe DNA origami
  openalex 2021 置信度 0.70 Advanced biosensing and bioanalysis techniquesRNA Interference and Gene DeliveryBacteriophages and microbial interactions
• AliView: a fast and lightweight alignment viewer and editor for large datasets
  openalex 2014 置信度 0.70 Genomics and Phylogenetic StudiesGenetics, Bioinformatics, and Biomedical ResearchScientific Computing and Data Management
• Electric fields unlock a transient vulnerability window for vancomycin-based treatment of staphylococcal biofilms
  openalex 2025 置信度 0.70 Planarian Biology and ElectrostimulationBacterial biofilms and quorum sensingMicrobial Inactivation Methods
• A Review of Wearable Electroceutical Devices for Chronic Wound Healing
  openalex 2025 置信度 0.70 Planarian Biology and ElectrostimulationAdvanced Sensor and Energy Harvesting MaterialsWound Healing and Treatments
• Advances in Physarum Machines: Sensing and Computing with Slime Mould
  openalex 2016 置信度 0.70 Slime Mold and Myxomycetes ResearchDiatoms and Algae ResearchPlant and Biological Electrophysiology Studies
• Passive vs Active Approaches in Particle Approximations of Reaction-Diffusion Computing
  openalex 2009 置信度 0.70 Slime Mold and Myxomycetes ResearchModular Robots and Swarm IntelligencePlant and Biological Electrophysiology Studies
• ROAD PLANNING WITH SLIME MOULD: IF PHYSARUM BUILT MOTORWAYS IT WOULD ROUTE M6/M74 THROUGH NEWCASTLE
  openalex 2010 置信度 0.70 Slime Mold and Myxomycetes ResearchDNA and Biological ComputingCellular Automata and Applications
• CGAL Arrangements and Their Applications: A Step-by-Step Guide
  openalex 2012 置信度 0.70 Computational Geometry and Mesh Generation3D Modeling in Geospatial ApplicationsGenome Rearrangement Algorithms
• Scalable molecular dynamics on CPU and GPU architectures with NAMD
  openalex 2020 置信度 0.70 Protein Structure and DynamicsAdvanced NMR Techniques and ApplicationsNanopore and Nanochannel Transport Studies
• Accelerating molecular dynamics simulations using Graphics Processing Units with CUDA
  openalex 2008 置信度 0.70 Parallel Computing and Optimization TechniquesProtein Structure and DynamicsDistributed and Parallel Computing Systems
• Twelve years of SAMtools and BCFtools
  openalex 2021 置信度 0.70 Genetic Mapping and Diversity in Plants and AnimalsGenomics and Phylogenetic StudiesGene expression and cancer classification
• GROMACS: A message-passing parallel molecular dynamics implementation
  openalex 1995 置信度 0.70 Protein Structure and DynamicsSpectroscopy and Quantum Chemical StudiesAdvanced Chemical Physics Studies
• DNA rendering of polyhedral meshes at the nanoscale
  openalex 2015 置信度 0.70 Advanced biosensing and bioanalysis techniquesRNA Interference and Gene DeliveryDNA and Nucleic Acid Chemistry
• DNA Origami Design of Dolphin-Shaped Structures with Flexible Tails
  openalex 2008 置信度 0.70 Advanced biosensing and bioanalysis techniquesRNA Interference and Gene DeliveryBacteriophages and microbial interactions
• Controlled assembly of dendrimer-like DNA
  openalex 2003 置信度 0.70 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingBacteriophages and microbial interactions
• Visual DSD: a design and analysis tool for DNA strand displacement systems
  openalex 2011 置信度 0.70 DNA and Nucleic Acid ChemistryAdvanced biosensing and bioanalysis techniquesRNA Interference and Gene Delivery
• Using lateral capillary forces to compute by self-assembly
  openalex 2000 置信度 0.70 DNA and Biological ComputingAdvanced biosensing and bioanalysis techniquesModular Robots and Swarm Intelligence
• Computing exponentially faster: implementing a non-deterministic universal Turing machine using DNA
  openalex 2017 置信度 0.70 DNA and Biological ComputingAdvanced biosensing and bioanalysis techniquesAlgorithms and Data Compression
• Construction of DNA-based logic gates on nanostructured microelectrodes
  openalex 2017 置信度 0.70 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingBiosensors and Analytical Detection
• A variance-stabilizing transformation for gene-expression microarray data
  openalex 2002 置信度 0.70 Gene expression and cancer classificationStatistical Methods and InferenceBayesian Methods and Mixture Models
• Comparison of Methods for Image-Based Profiling of Cellular Morphological Responses to Small-Molecule Treatment
  openalex 2013 置信度 0.70 Cell Image Analysis TechniquesAdvanced Fluorescence Microscopy TechniquesImage Processing Techniques and Applications
• The Reactome Pathway Knowledgebase 2024
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• A statistical framework for high-content phenotypic profiling using cellular feature distributions
  openalex 2022 置信度 0.70 Cell Image Analysis TechniquesImage Processing Techniques and Applications
• Capturing single-cell heterogeneity via data fusion improves image-based profiling
  openalex 2019 置信度 0.70 Cell Image Analysis TechniquesImage Processing Techniques and ApplicationsSingle-cell and spatial transcriptomics
• Alternate dyes for image-based profiling assays
  openalex 2025 置信度 0.70 Cell Image Analysis TechniquesAdvanced Fluorescence Microscopy TechniquesCellular Mechanics and Interactions
• The PRIDE database at 20 years: 2025 update
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• Reproducibility in systems biology modelling
  openalex 2021 置信度 0.70 Gene Regulatory Network AnalysisBioinformatics and Genomic NetworksScientific Computing and Data Management
• Cluster Validation by Prediction Strength
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• Phenotype clustering in health care: A narrative review for clinicians
  openalex 2022 置信度 0.70 Gene expression and cancer classificationBioinformatics and Genomic NetworksBiomedical Text Mining and Ontologies
• Low full-cell voltage driven high-current-density selective paired formate electrosynthesis
  openalex 2021 置信度 0.70 Electrocatalysts for Energy ConversionAdvanced Memory and Neural ComputingSemiconductor materials and devices
• Free energy minimisation algorithmfor decoding and cryptanalysis
  openalex 1995 置信度 0.70 Coding theory and cryptographyDNA and Biological ComputingCryptographic Implementations and Security
• Open-source image reconstruction of super-resolution structured illumination microscopy data in ImageJ
  openalex 2016 置信度 0.70 Advanced Fluorescence Microscopy TechniquesCell Image Analysis TechniquesPhotoacoustic and Ultrasonic Imaging
• The evolution of complexity without natural selection, a possible large-scale trend of the fourth kind
  openalex 2005 置信度 0.70 Evolution and Paleontology StudiesPaleontology and Evolutionary BiologyPhilosophy and History of Science
• Shaping 3D Root System Architecture
  openalex 2017 置信度 0.70 Plant nutrient uptake and metabolismAdvanced Data Storage TechnologiesParallel Computing and Optimization Techniques
• Why do we need hubs?
  openalex 2008 置信度 0.70 Distributed and Parallel Computing Systems
• The quadruplex and the vase
  openalex 1992 置信度 0.70 DNA and Nucleic Acid ChemistryAdvanced biosensing and bioanalysis techniquesDNA and Biological Computing
• Stepping into the omics era: Opportunities and challenges for biomaterials science and engineering
  openalex 2016 置信度 0.70 Machine Learning in Materials ScienceGene expression and cancer classificationGene Regulatory Network Analysis
• Smart Bioinks for the Printing of Human Tissue Models
  openalex 2022 置信度 0.70 3D Printing in Biomedical ResearchInnovative Microfluidic and Catalytic Techniques InnovationCell Image Analysis Techniques
• Testing Algorithms for Hard to Detect Thermal Crosstalk Induced Write Disturb Faults in Phase Change Memories
  openalex 2024 置信度 0.70 VLSI and Analog Circuit TestingSilicon and Solar Cell TechnologiesIterative Learning Control Systems
• Toward robust integrated circuits: The embryonics approach
  openalex 2000 置信度 0.70 DNA and Biological ComputingModular Robots and Swarm IntelligenceCellular Automata and Applications
• Self-replicating loop with universal construction
  openalex 2004 置信度 0.70 Cellular Automata and ApplicationsModular Robots and Swarm IntelligenceDNA and Biological Computing
• Embryonic Machines That Divide and Differentiate
  openalex 2004 置信度 0.70 Cellular Automata and ApplicationsModular Robots and Swarm IntelligenceDNA and Biological Computing
• Study of Multilevel Programming in Programmable Metallization Cell (PMC) Memory
  openalex 2009 置信度 0.70 Advanced Memory and Neural ComputingSemiconductor materials and devicesPhase-change materials and chalcogenides
• Cryptanalyzing an image cipher using multiple chaos and DNA operations
  openalex 2023 置信度 0.70 Chaos-based Image/Signal EncryptionFractal and DNA sequence analysisDNA and Biological Computing
• An image encryption scheme based on an optimal chaotic map derived by multi-objective optimization using ABC algorithm
  openalex 2021 置信度 0.70 Chaos-based Image/Signal EncryptionCoding theory and cryptographyDNA and Biological Computing
• Algorithm for DNA sequence assembly by quantum annealing
  openalex 2022 置信度 0.70 Genomics and Phylogenetic StudiesDNA and Biological ComputingFractal and DNA sequence analysis
• GROMACS: Fast, flexible, and free
  openalex 2005 置信度 0.70 Spectroscopy and Quantum Chemical StudiesProtein Structure and DynamicsAdvanced Chemical Physics Studies
• Overview of the CCP 4 suite and current developments
  openalex 2011 置信度 0.70 Enzyme Structure and FunctionProtein Structure and DynamicsComputational Drug Discovery Methods
• The integration of macromolecular diffraction data
  openalex 2005 置信度 0.70 Enzyme Structure and FunctionProtein Structure and DynamicsComputational Drug Discovery Methods
• The CCP 4 suite: integrative software for macromolecular crystallography
  openalex 2023 置信度 0.70 Enzyme Structure and FunctionProtein Structure and DynamicsAdvanced Electron Microscopy Techniques and Applications
• AmberTools
  openalex 2023 置信度 0.70 Protein Structure and DynamicsScientific Computing and Data ManagementMetabolomics and Mass Spectrometry Studies
• An autonomous molecular computer for logical control of gene expression
  openalex 2004 置信度 0.90 DNA and Biological ComputingAdvanced biosensing and bioanalysis techniquesRNA and protein synthesis mechanisms
• Bioconductor: open software development for computational biology and bioinformatics
  openalex 2004 置信度 0.90 Scientific Computing and Data ManagementGenetics, Bioinformatics, and Biomedical ResearchSingle-cell and spatial transcriptomics
• A multiple minima genetic algorithm for protein structure prediction
  openalex 2013 置信度 0.90 Protein Structure and DynamicsEnzyme Structure and FunctionMachine Learning in Bioinformatics
• Protein folding optimization based on 3D off-lattice model via an improved artificial bee colony algorithm
  openalex 2015 置信度 0.90 Protein Structure and DynamicsAlgorithms and Data CompressionBiofuel production and bioconversion
• A balance-evolution artificial bee colony algorithm for protein structure optimization based on a three-dimensional AB off-lattice model
  openalex 2014 置信度 0.90 Protein Structure and DynamicsComputational Drug Discovery MethodsMachine Learning in Bioinformatics
• MO4: A Many-Objective Evolutionary Algorithm for Protein Structure Prediction
  openalex 2021 置信度 0.90 Advanced Multi-Objective Optimization AlgorithmsProtein Structure and DynamicsEvolutionary Algorithms and Applications
• GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
  openalex 2004 置信度 0.90 Bioinformatics and Genomic NetworksGene expression and cancer classificationBiomedical Text Mining and Ontologies
• An Enhanced Genetic Algorithm for Ab Initio Protein Structure Prediction
  openalex 2015 置信度 0.90 Protein Structure and DynamicsMachine Learning in BioinformaticsGlycosylation and Glycoproteins Research
• Improved hybrid optimization algorithm for 3D protein structure prediction
  openalex 2014 置信度 0.90 Protein Structure and DynamicsMachine Learning in BioinformaticsRNA and protein synthesis mechanisms
• Protein secondary structure optimization using an improved artificial bee colony algorithm based on AB off-lattice model
  openalex 2013 置信度 0.90 Machine Learning in BioinformaticsProtein Structure and DynamicsMetaheuristic Optimization Algorithms Research
• EMBOSS: The European Molecular Biology Open Software Suite
  openalex 2000 置信度 0.90 Bioinformatics and Genomic NetworksGenomics and Phylogenetic StudiesGene expression and cancer classification
• A multi-objective butterfly optimization algorithm for protein encoding
  openalex 2023 置信度 0.90 RNA and protein synthesis mechanismsMonoclonal and Polyclonal Antibodies Researchvaccines and immunoinformatics approaches
• RNA Computing in a Living Cell
  openalex 2008 置信度 0.90 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingModular Robots and Swarm Intelligence
• Soft computing methods for the prediction of protein tertiary structures: A survey
  openalex 2015 置信度 0.90 Protein Structure and DynamicsMachine Learning in BioinformaticsEnzyme Structure and Function
• Protein structure optimization using improved simulated annealing algorithm on a three-dimensional AB off-lattice model
  openalex 2020 置信度 0.90 Protein Structure and DynamicsRNA and protein synthesis mechanismsEnzyme Structure and Function
• The Virtual Cell: a software environment for computational cell biology
  openalex 2001 置信度 0.90 Gene Regulatory Network AnalysisMicrotubule and mitosis dynamicsPlant Molecular Biology Research
• The HumanCyc Pathway-Genome Database and Pathway Tools Software as Tools for Imaging and Analyzing Metabolomics Data
  openalex 2012 置信度 0.90 Metabolomics and Mass Spectrometry StudiesBioinformatics and Genomic NetworksGene expression and cancer classification
• GWAMA: software for genome-wide association meta-analysis
  openalex 2010 置信度 0.90 Genetic Associations and EpidemiologyGenetic Mapping and Diversity in Plants and AnimalsGenetic and phenotypic traits in livestock
• Divide-and-Conquer Quantum Algorithm for Hybrid de novo Genome Assembly of Short and Long Reads
  openalex 2024 置信度 0.90 DNA and Biological ComputingAlgorithms and Data CompressionEvolutionary Algorithms and Applications
• Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
  openalex 2003 置信度 0.90 Bioinformatics and Genomic NetworksMicrobial Metabolic Engineering and BioproductionGene Regulatory Network Analysis
• A biological sequence comparison algorithm using quantum computers
  openalex 2023 置信度 0.90 Fractal and DNA sequence analysisGenomics and Phylogenetic StudiesMachine Learning in Bioinformatics
• An algorithm for secondary structure determination in proteins based on sequence similarity
  openalex 1986 置信度 0.90 Protein Structure and DynamicsMachine Learning in BioinformaticsRNA and protein synthesis mechanisms
• A massively parallel speciation‐based differential evolution algorithm applied to the 3D‐AB protein structure prediction
  openalex 2021 置信度 0.90 Evolutionary Algorithms and ApplicationsMetaheuristic Optimization Algorithms ResearchMachine Learning in Bioinformatics
• Quantum computing algorithms: getting closer to critical problems in computational biology
  openalex 2022 置信度 0.90 Quantum Computing Algorithms and ArchitectureGenetics, Bioinformatics, and Biomedical ResearchQuantum-Dot Cellular Automata
• SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
  openalex 2012 置信度 0.90 Genomics and Phylogenetic StudiesMicrobial Community Ecology and PhysiologyProtist diversity and phylogeny
• Women are underrepresented in computational biology: An analysis of the scholarly literature in biology, computer science and computational biology
  openalex 2017 置信度 0.90 scientometrics and bibliometrics researchDiversity and Career in MedicineAcademic Writing and Publishing
• Ocean biodiversity informatics: a new era in marine biology research and management
  openalex 2006 置信度 0.90 Marine and fisheries researchMarine Bivalve and Aquaculture StudiesCoral and Marine Ecosystems Studies
• MolPhase, an advanced prediction algorithm for protein phase separation
  openalex 2024 置信度 0.90 RNA Research and SplicingRNA modifications and cancerRNA and protein synthesis mechanisms
• On Computing Equilibrium Binding Constants for Protein–Protein Association in Membranes
  openalex 2022 置信度 0.90 Lipid Membrane Structure and BehaviorProtein Structure and DynamicsSpectroscopy and Quantum Chemical Studies
• Developing and reusing bioinformatics data analysis pipelines using scientific workflow systems
  openalex 2023 置信度 0.90 Scientific Computing and Data ManagementDistributed and Parallel Computing SystemsAdvanced Data Storage Technologies
• Inferring biosynthetic and gene regulatory networks from Artemisia annua RNA sequencing data on a credit card-sized ARM computer
  openalex 2019 置信度 0.90 Viral Infectious Diseases and Gene Expression in InsectsPlant biochemistry and biosynthesisCRISPR and Genetic Engineering
• Quantum‐based exact pattern matching algorithms for biological sequences
  openalex 2021 置信度 0.90 Algorithms and Data CompressionDNA and Biological ComputingGenomics and Phylogenetic Studies
• Facilitating bioinformatics reproducibility with QIIME 2 Provenance Replay
  openalex 2023 置信度 0.90 Scientific Computing and Data ManagementResearch Data Management PracticesCell Image Analysis Techniques
• An algorithm for mapping positively selected members of quasispecies-type viruses
  openalex 2001 置信度 0.90 Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsEvolution and Genetic Dynamics
• A robust multiplexer-based FPGA inspired by biological systems
  openalex 1997 置信度 0.90 Cellular Automata and ApplicationsEvolutionary Algorithms and ApplicationsDNA and Biological Computing
• Classification and prediction of protein–protein interaction interface using machine learning algorithm
  openalex 2021 置信度 0.90 Computational Drug Discovery MethodsProtein Structure and DynamicsBioinformatics and Genomic Networks
• myExperiment: a repository and social network for the sharing of bioinformatics workflows
  openalex 2010 置信度 0.90 Scientific Computing and Data ManagementResearch Data Management PracticesDistributed and Parallel Computing Systems
• Interactive Cloud Experimentation for Biology
  openalex 2015 置信度 0.90 Slime Mold and Myxomycetes ResearchScientific Computing and Data ManagementCell Image Analysis Techniques
• Fiji: an open-source platform for biological-image analysis
  openalex 2012 置信度 0.90 Cell Image Analysis TechniquesGenetics, Bioinformatics, and Biomedical ResearchGenomics and Phylogenetic Studies
• PhenoRipper: software for rapidly profiling microscopy images
  openalex 2012 置信度 0.90 Cell Image Analysis TechniquesImage Processing Techniques and ApplicationsGenetics, Bioinformatics, and Biomedical Research
• A task-specific encoding algorithm for RNAs and RNA-associated interactions based on convolutional autoencoder
  openalex 2023 置信度 0.90 RNA and protein synthesis mechanismsRNA Research and SplicingCancer-related molecular mechanisms research
• Mobyle: a new full web bioinformatics framework
  openalex 2009 置信度 0.90 Scientific Computing and Data ManagementGenomics and Phylogenetic StudiesGenetics, Bioinformatics, and Biomedical Research
• Recent advances in computer-aided drug design
  openalex 2009 置信度 0.90 Computational Drug Discovery MethodsGenetics, Bioinformatics, and Biomedical ResearchProtein Structure and Dynamics
• BioCircos.js: an interactive Circos JavaScript library for biological data visualization on web applications
  openalex 2016 置信度 0.90 Genetics, Bioinformatics, and Biomedical ResearchGenomics and Phylogenetic StudiesScientific Computing and Data Management
• Manufacturing Blockchain of Things for the Configuration of a Data- and Knowledge-Driven Digital Twin Manufacturing Cell
  openalex 2020 置信度 0.90 Blockchain Technology Applications and SecurityDigital Transformation in IndustryIoT and Edge/Fog Computing
• Contract-Based Small-Cell Caching for Data Disseminations in Ultra-Dense Cellular Networks
  openalex 2018 置信度 0.90 Caching and Content DeliveryCooperative Communication and Network CodingAdvanced Wireless Network Optimization
• OrthoANI: An improved algorithm and software for calculating average nucleotide identity
  openalex 2015 置信度 0.90 Genomics and Phylogenetic StudiesGenetic diversity and population structureProbiotics and Fermented Foods
• Software-Supported USER Cloning Strategies for Site-Directed Mutagenesis and DNA Assembly
  openalex 2014 置信度 0.90 DNA Repair MechanismsDNA and Nucleic Acid ChemistryRNA and protein synthesis mechanisms
• Molecular Computation of Solutions to Combinatorial Problems
  openalex 1994 置信度 0.90 DNA and Biological ComputingGene Regulatory Network AnalysisAdvanced biosensing and bioanalysis techniques
• Computer model for glucose‐limited growth of a single cell of Escherichia coli B/r‐A
  openalex 1984 置信度 0.90 Bacterial Genetics and BiotechnologyMicrobial Metabolic Engineering and BioproductionGene Regulatory Network Analysis
• Phenonaut: multiomics data integration for phenotypic space exploration
  openalex 2023 置信度 0.90 Cell Image Analysis TechniquesScientific Computing and Data ManagementSingle-cell and spatial transcriptomics
• Improvements to the APBS biomolecular solvation software suite
  openalex 2017 置信度 0.90 Protein Structure and DynamicsGene Regulatory Network AnalysisAdvanced Fluorescence Microscopy Techniques
• Global Kinetic Explorer: A new computer program for dynamic simulation and fitting of kinetic data
  openalex 2008 置信度 0.90 Gene Regulatory Network AnalysisMicrobial Metabolic Engineering and BioproductionProtein Structure and Dynamics
• A DIseAse MOdule Detection (DIAMOnD) Algorithm Derived from a Systematic Analysis of Connectivity Patterns of Disease Proteins in the Human Interactome
  openalex 2015 置信度 0.70 Bioinformatics and Genomic NetworksComplex Network Analysis TechniquesComputational Drug Discovery Methods
• CellProfiler 4: improvements in speed, utility and usability
  openalex 2021 置信度 0.70 Cell Image Analysis TechniquesAdvanced Fluorescence Microscopy TechniquesSingle-cell and spatial transcriptomics
• A Review of Solid Oxide Fuel Cell (SOFC) Dynamic Models
  openalex 2009 置信度 0.70 Advancements in Solid Oxide Fuel CellsFuel Cells and Related MaterialsChemical Looping and Thermochemical Processes
• INfORM: Inference of NetwOrk Response Modules
  openalex 2018 置信度 0.70 Bioinformatics and Genomic NetworksSingle-cell and spatial transcriptomicsGene expression and cancer classification
• Unsupervised cluster analysis and subset characterization of abnormal erythropoiesis using the bioinformatic Flow‐Self Organizing Maps algorithm
  openalex 2022 置信度 0.70 Acute Myeloid Leukemia ResearchSingle-cell and spatial transcriptomicsMyeloproliferative Neoplasms: Diagnosis and Treatment
• Flexible and twistable non-volatile memory cell array with all-organic one diode–one resistor architecture
  openalex 2013 置信度 0.70 Advanced Memory and Neural ComputingOrganic Electronics and PhotovoltaicsConducting polymers and applications
• UCSF ChimeraX: Meeting modern challenges in visualization and analysis
  openalex 2017 置信度 0.70 Scientific Computing and Data ManagementBioinformatics and Genomic NetworksCell Image Analysis Techniques
• STAR: ultrafast universal RNA-seq aligner
  openalex 2012 置信度 0.70 Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsRNA Research and Splicing
• GeneFormer: Learned Gene Compression using Transformer-Based Context Modeling
  openalex 2024 置信度 0.70 Algorithms and Data CompressionGene expression and cancer classificationDNA and Biological Computing
• Snakemake—a scalable bioinformatics workflow engine
  openalex 2012 置信度 0.70 Genomics and Phylogenetic StudiesScientific Computing and Data ManagementAdvanced Proteomics Techniques and Applications
• Energy-Efficient Data Offloading for Multi-Cell Satellite-Terrestrial Networks
  openalex 2020 置信度 0.70 Satellite Communication SystemsAdvanced MIMO Systems OptimizationIoT Networks and Protocols
• Recent Progress of Protein‐Based Data Storage and Neuromorphic Devices
  openalex 2021 置信度 0.70 Photoreceptor and optogenetics researchDistributed systems and fault tolerancePhotosynthetic Processes and Mechanisms
• Towards BioDBcore: a community-defined information specification for biological databases
  openalex 2010 置信度 0.70 Biomedical Text Mining and OntologiesScientific Computing and Data ManagementSemantic Web and Ontologies
• A versatile information retrieval framework for evaluating profile strength and similarity
  openalex 2025 置信度 0.70 Cell Image Analysis TechniquesSingle-cell and spatial transcriptomicsComputational Drug Discovery Methods
• Stellar quality control for single-cell image-based profiling with coSMicQC
  openalex 2025 置信度 0.70 CCD and CMOS Imaging Sensors
• Lessons Learned from Quantitative Dynamical Modeling in Systems Biology
  openalex 2013 置信度 0.70 Gene Regulatory Network AnalysisMicrobial Metabolic Engineering and BioproductionEvolution and Genetic Dynamics
• Digitized Counterdiabatic Quantum Algorithm for Protein Folding
  openalex 2023 置信度 0.70 Quantum Computing Algorithms and ArchitectureQuantum Information and CryptographyQuantum-Dot Cellular Automata
• Protein Structure and Function: Looking through the Network of Side-Chain Interactions
  openalex 2015 置信度 0.70 Protein Structure and DynamicsMicrobial Metabolic Engineering and BioproductionComputational Drug Discovery Methods
• FINEMAP: efficient variable selection using summary data from genome-wide association studies
  openalex 2016 置信度 0.70 Genetic Associations and EpidemiologyGenomics and Rare DiseasesAdvanced Causal Inference Techniques
• ColabFold: making protein folding accessible to all
  openalex 2022 置信度 0.70 Genomics and Phylogenetic StudiesMachine Learning in BioinformaticsProtein Structure and Dynamics
• Selection of appropriate metaheuristic algorithms for protein structure prediction in AB off-lattice model: a perspective from fitness landscape analysis
  openalex 2017 置信度 0.70 Protein Structure and DynamicsMachine Learning in BioinformaticsRNA and protein synthesis mechanisms
• A Content-Addressable DNA Database with Learned Sequence Encodings
  openalex 2018 置信度 0.70 DNA and Biological ComputingAlgorithms and Data CompressionAdvanced Image and Video Retrieval Techniques
• Embryonic electronics
  openalex 1999 置信度 0.70 Modular Robots and Swarm IntelligenceEvolutionary Algorithms and ApplicationsDNA and Biological Computing
• Automated tracking of cell migration in phase contrast images with CellTraxx
  openalex 2023 置信度 0.70 Cell Image Analysis TechniquesCellular Mechanics and InteractionsDigital Holography and Microscopy
• DNA Fountain enables a robust and efficient storage architecture
  openalex 2017 置信度 0.70 DNA and Biological ComputingAdvanced biosensing and bioanalysis techniquesModular Robots and Swarm Intelligence
• Computational methods for trajectory inference from single‐cell transcriptomics
  openalex 2016 置信度 0.70 Single-cell and spatial transcriptomicsImmune Response and InflammationT-cell and B-cell Immunology
• NMR: prediction of molecular alignment from structure using the PALES software
  openalex 2008 置信度 0.70 Protein Structure and DynamicsMolecular spectroscopy and chiralityAdvanced NMR Techniques and Applications
• DNA Features Viewer: a sequence annotation formatting and plotting library for Python
  openalex 2020 置信度 0.70 Genomics and Phylogenetic StudiesComputational Physics and Python ApplicationsGenetics, Bioinformatics, and Biomedical Research
• Haplotype-resolved assembly of diploid and polyploid genomes using quantum computing
  openalex 2024 置信度 0.70 Evolutionary Algorithms and ApplicationsProtein Degradation and InhibitorsCRISPR and Genetic Engineering
• Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale
  openalex 2022 置信度 0.70 Scientific Computing and Data ManagementResearch Data Management PracticesMetabolomics and Mass Spectrometry Studies
• Symbolic Kinetic Models in Python (SKiMpy): Intuitive modeling of large-scale biological kinetic models
  openalex 2022 置信度 0.70 Microbial Metabolic Engineering and BioproductionGene Regulatory Network AnalysisViral Infectious Diseases and Gene Expression in Insects
• Practical considerations for data exploration in quantitative cell biology
  openalex 2025 置信度 0.70 Cell Image Analysis TechniquesGenetics, Bioinformatics, and Biomedical ResearchScientific Computing and Data Management
• Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM
  openalex 2019 置信度 0.70 Single-cell and spatial transcriptomicsCancer Genomics and DiagnosticsEpigenetics and DNA Methylation
• CMfinder—a covariance model based RNA motif finding algorithm
  openalex 2005 置信度 0.70 RNA and protein synthesis mechanismsRNA modifications and cancerRNA Research and Splicing
• Next-Generation Digital Information Storage in DNA
  openalex 2012 置信度 0.70 DNA and Biological ComputingAdvanced biosensing and bioanalysis techniquesGene expression and cancer classification
• Chaotic step length artificial bee colony algorithms for protein structure prediction
  openalex 2020 置信度 0.70 Protein Structure and DynamicsComputational Drug Discovery MethodsAdvanced Proteomics Techniques and Applications
• Interpreting Image‐based Profiles using Similarity Clustering and Single‐Cell Visualization
  openalex 2023 置信度 0.70 Cell Image Analysis TechniquesSingle-cell and spatial transcriptomicsAdvanced Fluorescence Microscopy Techniques
• Genome Informatics and Machine Learning-Based Identification of Antimicrobial Resistance-Encoding Features and Virulence Attributes in Escherichia coli Genomes Representing Globally Prevalent Lineages, Including High-Risk Clonal Complexes
  openalex 2022 置信度 0.70 Antibiotic Resistance in BacteriaEscherichia coli research studiesBacteriophages and microbial interactions
• TrackAnalyzer: A Fiji/ImageJ toolbox for a holistic analysis of tracks
  openalex 2023 置信度 0.70 Cell Image Analysis TechniquesSingle-cell and spatial transcriptomicsAdvanced Fluorescence Microscopy Techniques
• Inferring time derivatives including cell growth rates using Gaussian processes
  openalex 2016 置信度 0.70 Metabolomics and Mass Spectrometry StudiesGene Regulatory Network AnalysisCell Image Analysis Techniques
• COMO: a pipeline for multi-omics data integration in metabolic modeling and drug discovery
  openalex 2023 置信度 0.70 Microbial Metabolic Engineering and BioproductionBioinformatics and Genomic NetworksGene Regulatory Network Analysis
• Information-driven modeling of biomolecular complexes
  openalex 2021 置信度 0.70 Monoclonal and Polyclonal Antibodies ResearchGlycosylation and Glycoproteins ResearchProtein Structure and Dynamics
• Interactive visualization of nanopore sequencing signal data with Squigualiser
  openalex 2024 置信度 0.70 Genomics and Phylogenetic StudiesNanopore and Nanochannel Transport StudiesRNA and protein synthesis mechanisms
• Arithmetic and logic operations with DNA
  openalex 1999 置信度 0.70 Advanced biosensing and bioanalysis techniquesDNA and Biological ComputingModular Robots and Swarm Intelligence
• A Dictionary Learning Approach with Overlap for the Low Dose Computed Tomography Reconstruction and Its Vectorial Application to Differential Phase Tomography
  X-ray based Phase-Contrast Imaging (PCI) techniques have been demonstrated to enhance the visualization of soft tissues in comparison to conventional imaging methods. Nevertheless the delivered dose as reported in the literature of biomedical PCI applications …
  openalex Alessandro Mirone, Emmanuel Brun, Paola Coan 2014-12-22 置信度 0.80 TomographyComputed tomographyDictionary learningPhase (matter)Differential (mechanical device)
• The state and prospects of TB control service in Russia during the COVID-19 pandemic
  The objective: to determine the state and prospects of TB control services including the period during the COVID-19 pandemic. Materials. Data from Federal Statistic Surveillance Forms no. 4, 8, 14, 14-DS, 30, 33, 47, and 61 were analyzed. The number of those d…
  openalex O B Nechaeva 2021-01-18 置信度 0.82 Incidence (geometry)PandemicPopulationMedicineDemography
• Building climate resilience, social sustainability and equity in global fisheries
  Abstract Although the Paris Agreement establishes targets to limit global warming—including carbon market mechanisms—little research has been done on developing operational tools to achieve them. To cover this gap, we use CO2 permit markets towards a market-ba…
  openalex Raúl Prellezo, José María Da Rocha, Maria Lourdes D. Palomares, U. Rashid Sumaila 等 2023-08-07 置信度 0.82 SustainabilityEmissions tradingNatural resource economicsGlobal warmingBusiness
• Simulation of anisotropic growth of low‐grade gliomas using diffusion tensor imaging
  A recent computational model of brain tumor growth, developed to better describe how gliomas invade through the adjacent brain parenchyma, is based on two major elements: cell proliferation and isotropic cell diffusion. On the basis of this model, glioma growt…
  openalex Saâd Jbabdi, Emmanuel Mandonnet, Hugues Duffau, Laurent Capelle 等 2005-08-08 置信度 0.78 Diffusion MRIAnisotropyIsotropyFractional anisotropyAnisotropic diffusion
• The Use of Computed Tomography Densitometry for the Assessment of Emphysema in Clinical Trials: A Position Paper from the Fleischner Society
  Emphysema's significant morbidity and mortality underscore the need for reliable outcome metrics in clinical trials. However, commonly accepted chronic obstructive pulmonary disease outcome measures do not adequately capture emphysema severity or progression. …
  openalex Raúl San Jośe Estépar, R. Graham Barr, Sean B. Fain, Philippe Greniér 等 2025-03-24 置信度 0.84 MedicineDensitometryPosition (finance)Nuclear medicineClinical trial
• Biological use influences the impact of inflammation on risk of major adverse cardiovascular events in rheumatoid arthritis
  OBJECTIVES: Chronic inflammation promotes cardiovascular risk in rheumatoid arthritis (RA). Biological disease-modifying antirheumatic drugs (bDMARDs) improve disease activity and cardiovascular disease outcomes. We explored whether bDMARDs influence the impac…
  openalex George Karpouzas, Sarah R. Ormseth, Piet Leonardus Cornelis Maria van Riel, Miguel Á. González‐Gay 等 2024-07-01 置信度 0.84 MedicineRheumatoid arthritisInflammationAdverse effectIntensive care medicine
• Prenatal and childhood lead exposure is prospectively associated with biological markers of aging in adolescence
  openalex Olivia M. Halabicky, Martha María Téllez‐Rojo, Jaclyn M. Goodrich, Dana C. Dolinoy 等 2024-01-02 置信度 0.73 GeeGeneralized estimating equationMedicineDNA methylationPregnancy
• Clinical biomarker–based biological ageing and the risk of adverse outcomes in patients with chronic kidney disease
  OBJECTIVE: Patients with chronic kidney disease (CKD) show features of premature ageing. We aimed to evaluate the association between biological ageing and adverse outcomes, including end-stage kidney disease (ESKD), cardiovascular diseases (CVD) and all-cause…
  openalex Hao Xiang, Yu Huang, Yuanyuan Zhang, Panpan He 等 2024-10-29 置信度 0.84 MedicineKidney diseaseDiseaseBiomarkerAdverse effect
• Big Data Deep Learning: Challenges and Perspectives
  Deep learning is currently an extremely active research area in machine learning and pattern recognition society. It has gained huge successes in a broad area of applications such as speech recognition, computer vision, and natural language processing. With th…
  openalex Xuewen Chen, Xiaotong Lin 2014-01-01 置信度 0.72 Big dataTransformative learningDeep learningComputer scienceData science
• Global, regional, and national comparative risk assessment of 79 behavioural, environmental and occupational, and metabolic risks or clusters of risks in 188 countries, 1990–2013: a systematic analysis for the Global Burden of Disease Study 2013
  openalex Mohammad H. Forouzanfar, Lily Alexander, H Ross Anderson, Victoria F Bachman 等 2015-09-12 置信度 0.66 Environmental healthRisk assessmentMedicinePopulationRelative risk
• From Generation to Judgment: Opportunities and Challenges of LLM-as-a-judge
  Dawei Li, Bohan Jiang, Liangjie Huang, Alimohammad Beigi, Chengshuai Zhao, Zhen Tan, Amrita Bhattacharjee, Yuxuan Jiang, Canyu Chen, Tianhao Wu, Kai Shu, Lu Cheng, Huan Liu. Proceedings of the 2025 Conference on Empirical Methods in Natural Language Processing…
  openalex Da-Wei Li, Bohan Jiang, Lili Huang, Alimohammad Beigi 等 2025-01-01 置信度 0.73 Natural (archaeology)EpistemologyComputer scienceEmpirical researchNatural language
• Wafer-scale fabrication of memristive passive crossbar circuits for brain-scale neuromorphic computing
  Memristive passive crossbar circuits hold great promise for neuromorphic computing, offering high integration density combined with massively parallel operation. However, scaling up the integration complexity of such circuits remains challenging due to low dev…
  openalex Sanghyeon Choi, Sai Sukruth Bezugam, Tinish Bhattacharya, Dongseok Kwon 等 2025-10-01 置信度 0.84 Neuromorphic engineeringCrossbar switchMemristorComputer scienceScalability
• Integrating Genomics and Proteomics Technologies in Biological Research: Advantages, Challenges, and Prospects
  Introduction: The integration of genomics and proteomics, two cornerstone omics technologies, has transformed our understanding of biological systems, enabling deeper insights into disease mechanisms, biomarker discovery, and the development of personalised me…
  openalex Seyi Samson Enitan, Esther Ngozi Adejumo, Osakue E. Osareniro, S. S. Eke 等 2025-06-29 置信度 0.84 ProteomicsGenomicsData scienceComputational biologyComputer science
• Combining the fourth‐corner and the RLQ methods for assessing trait responses to environmental variation
  Assessing trait responses to environmental gradients requires the simultaneous analysis of the information contained in three tables: L (species distribution across samples), R (environmental characteristics of samples), and Q (species traits). Among the avail…
  openalex Stéphane Dray, Philippe Choler, Sylvain Dolédec, Pedro R. Peres‐Neto 等 2013-09-20 置信度 0.76 TraitOrdinationComplementarity (molecular biology)EcologyMultivariate statistics
• Correspondence of biological condition models of California streams at statewide and regional scales
  We used boosted regression trees (BRT) to model stream biological condition as measured by benthic macroinvertebrate taxonomic completeness, the ratio of observed to expected (O/E) taxa. Models were developed with and without exclusion of rare taxa at a site. …
  openalex Jason T. May, Larry R. Brown, Andrew C. Rehn, Ian R. Waite 等 2014-11-11 置信度 0.80 EcoregionWatershedSTREAMSEnvironmental scienceLand cover

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