10000 条实体 · 最后更新 2026-08-31T14:45:06.506Z · Computer science / Suite / Annotation / Unix / Source code / Genomics / Cancer / Computational biology / Biology / Bioinformatics / Automatic summarization / Bioconductor
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Admixture between long-separated populations is a defining feature of the genomes of many species. The mosaic block structure of admixed genomes can provide information about past contact events, including the time and extent of admixture. Here, we describe an…
openalex
Jean Sanderson, Herawati Sudoyo, Tatiana M. Karafet, Michael F. Hammer 等
2015-04-07
置信度 0.72
WaveletBiologyGenomeCoalescent theoryRange (aeronautics)
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openalex
Evan D. Muse, Ali Torkamani, Eric J. Topol
2018-06-01
置信度 0.72
GenomicsComputational biologyComputer scienceBiologyGenetics
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Trypanosoma cruzi is the causative agent of Chagas disease, a neglected tropical disease, and one of the most important parasitic diseases worldwide. The first genome of T. cruzi was sequenced in 2005, and its complexity made assembly and annotation challengin…
openalex
Alfonso Herreros‐Cabello, Francisco Callejas‐Hernández, Núria Gironès, Manuel Fresno
2025-01-12
置信度 0.72
BiologyTrypanosoma cruziGenomeGeneGenetics
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Background: Ayurveda, the ancient Indian system of medicine, emphasizes personalized holistic care, presenting unique opportunities for integration with Artificial Intelligence (AI). Since 2020, a growing body of research has explored AI applications in Ayurve…
openalex
Srishti Shaumya, R. Mathusoothana S. Kumar
2025-07-01
置信度 0.72
PsychologyData scienceArtificial intelligenceComputer scienceCognitive science
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absent
openalex
Michèle Tixier‐Boichard, Étienne Verrier, Xavier Rognon, Tatiana Zerjal
2015-04-30
置信度 0.72
AgroecologyGenomicsLivestockPerspective (graphical)Genetic resources
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Satellite DNA is one of the major classes of repetitive DNA, characterized by tandemly arranged repeat copies that form contiguous arrays up to megabases in length. This type of genomic organization makes satellite DNA difficult to assemble, which hampers char…
openalex
Petr Novák, Laura Ávila Robledillo, Andrea Koblížková, Iva Vrbová 等
2017-04-05
置信度 0.72
BiologySatellite DNATandem repeatGenomeContig
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Structural variations (SVs) are a feature of plant genomes that has been largely unexplored despite their significant impact on plant phenotypic traits and local adaptation to abiotic and biotic stress. In this study, we employed woolly grape (Vitis retordii),…
openalex
Tianhao Zhang, Wenjing Peng, Hua Xiao, Shuo Cao 等
2024-04-05
置信度 0.72
Local adaptationBiologyAdaptation (eye)PopulationCandidate gene
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OrthoDB (https://www.orthodb.org) offers evolutionary and functional annotations of orthologous genes in the widest sampling of eukaryotes, prokaryotes, and viruses, extending experimental gene function knowledge to newly sequenced genomes. We collect gene ann…
openalex
Fredrik Tegenfeldt, Dmitry Kuznetsov, Mosè Manni, Matthew Berkeley 等
2024-11-12
置信度 0.72
BiologyGenomeGeneAnnotationGenetics
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Adenomatous polyposis syndromes are hereditary conditions characterised by the development of multiple adenomas in the gastrointestinal tract, particularly in the colon and rectum, significantly increasing the risk of colorectal cancer and, in some cases, extr…
openalex
Jihoon E. Joo, Julen Viana-Errasti, Daniel D. Buchanan, Laura Valle
2025-04-16
置信度 0.72
MUTYHFamilial adenomatous polyposisBiologyAdenomatous polyposis coliDNA mismatch repair
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openalex
Joseph G. Gleeson, C. Frank Bennett, Jeffrey B. Carroll, Tracy Cole 等
2023-05-11
置信度 0.72
OligonucleotideFoundation (evidence)Computational biologyBiologyMedicine
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BACKGROUND: The 21-gene recurrence score (RS) assay (Oncotype DX) is used to guide adjuvant chemotherapy use for patients with hormone receptor-positive, HER2 (human epidermal growth factor receptor 2)-negative, axillary node-negative breast cancer. Its role, …
openalex
Joseph A. Sparano, Michael Crager, Robert J. Gray, Gong Tang 等
2024-07-23
置信度 0.72
Breast cancerMedicineOncologyCancerInternal medicine
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To counter the rising incidence of diabetes and to meet the daily protein needs, we created low glycemic index (GI) rice varieties with protein content (PC) surpassing 14%. In the development of recombinant inbred lines using Samba Mahsuri and IR36 amylose ext…
openalex
Saurabh Badoni, Erstelle A. Pasion-Uy, Sakshi Kor, Sung‐Ryul Kim 等
2024-08-27
置信度 0.72
AmyloseBiologyQuantitative trait locusGeneGenetics
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Attention-deficit/hyperactivity disorder (ADHD) is an impairing neurodevelopmental condition highly prevalent in current populations. Several hypotheses have been proposed to explain this paradox, mainly in the context of the Paleolithic versus Neolithic cultu…
openalex
Paula Esteller-Cucala, Iago Maceda, Anders D. Børglum, Ditte Demontis 等
2020-05-25
置信度 0.72
NeanderthalContext (archaeology)AlleleIntrogressionAttention deficit hyperactivity disorder
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Background & Aims: Lean patients with non-alcoholic fatty liver disease (NAFLD) represent 10-20% of the affected population and may have heterogeneous drivers of disease. We have recently proposed the evaluation of patients with lean NAFLD without visceral adi…
openalex
Melanie Zheng, Daniel Q. Huang, Chigoziri Konkwo, Saaket Agrawal 等
2023-02-02
置信度 0.72
Fatty liverExome sequencingMedicineDiseaseExome
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The complete primary structure of the bovine alpha 1(X) collagen chain was determined by nucleotide sequencing of cDNA clones. The overlapping cDNA clones encode 3144 bp with a 5'-terminal untranslated region of 148 bp, a 2025 bp reading frame and a 3'-termina…
openalex
Jack Thomas, Alvin P.L. Kwan, Michael E. Grant, Ray Boot-Handford
1991-01-01
置信度 0.72
Complementary DNAUntranslated regionBiologyMolecular biologyExon
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Hybrid breeding is widely acknowledged as the most effective method for increasing crop yield, particularly in maize and rice. However, a major challenge in hybrid breeding is the selection of desirable combinations from the vast pool of potential crosses. Gen…
openalex
Yang Xu, Wenyan Yang, Jie Qiu, Kai Zhou 等
2024-11-28
置信度 0.72
Genomic selectionComputational biologyBiologyMarker-assisted selectionGenetics
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While many core biological processes are conserved across species, the human brain has evolved with unique capacities. Current understanding of the neurobiological mechanisms that endow human traits as well as associated vulnerabilities remains limited. Howeve…
openalex
Ralda Nehme, Olli Pietiläinen, Lindy E. Barrett
2024-06-18
置信度 0.72
NeuroscienceHuman brainDivergence (linguistics)BiologyHuman genome
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Abstract Clostridium perfringens is often associated with foodborne diseases, posing significant public health risks. However, genomic investigation of C. perfringens isolates from the human population has been lacking. This study aims to fill this knowledge g…
openalex
Ke Wu, Juan Wang, Zelin Yan, Yanyan Zhu 等
2024-10-25
置信度 0.72
Clostridium perfringensAdaptation (eye)MicrobiologyBiologyComputational biology
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Soil salinization has been considered as a global problem in agriculture, which decreases crop productivity and threatens food security. Salt stress causes complex physiological damages in plants such as ionic imbalance, osmotic stress, and oxidative damage. H…
openalex
Yi Ren, He Yan, Aiyuan Ma
2026-01-07
置信度 0.72
RhizosphereBiologyRhizobacteriaMicrobiomeAbiotic stress
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Many international, national, state, and local organizations prioritize the ranking of threatened and endangered species to help direct conservation efforts. For example, the International Union for Conservation of Nature (IUCN) assesses the Green Status of sp…
openalex
Jong Yoon Jeon, Andrew N. Black, Erangi J. Heenkenda, Andrew J. Mularo 等
2024-09-01
置信度 0.72
BiologyGenomeKey (lock)Computational biologyDiversity (politics)
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The convergence of natural language processing (NLP) and genomics has given rise to a new class of transformer-based models-genome large language models (Gene-LLMs)-capable of interpreting the language of life at an unprecedented scale and resolution. These mo…
openalex
P. Balakrishnan, A. Anny Leema, V. Dhivya Shree, Chadi Saad 等
2025-10-13
置信度 0.72
Computer scienceGenomicsInterpretabilityDECIPHERInference
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openalex
M. Martín, S.R. Stecklein, Oleg Gluz, Guillermo Villacampa 等
2024-10-16
置信度 0.72
MedicineTaxaneTriple-negative breast cancerOncologyStage (stratigraphy)
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aims to enhance the contribution of traditional, complementary and integrative medicine to achieving universal health coverage by strengthening the integration of evidence-based traditional, complementary and integrative medicine into national health systems. …
openalex
Yuk Ming Alice Wong, Sangyoungchol Ahn, Aditi Bana, Pradeep Kumar Dua 等
2025-11-01
置信度 0.72
Integrative medicineMisappropriationTraditional knowledgeIndigenousGlobal health
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openalex
Marzena Pazgier, David M. Hoover, De Yang, Weiyue Lu 等
2006-05-15
置信度 0.72
BiologyMicrobiologyChemistry
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Abstract The emergence of animal phyla, each with their unique body plan, was a rapid event in the history of animal life, yet its genomic underpinnings are still poorly understood1. Here we investigate at the genomic, regulatory and cellular levels, the origi…
openalex
Laura Piovani, Daria Gavriouchkina, Elise Parey, Luke A. Sarre 等
2025-08-13
置信度 0.72
Body planBiologyEvolutionary biologyZoologyComputational biology
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AIM: To screen 90 clinical isolates of thermophilic Campylobacter species for putative resistance to ampicillin, erythromycin and tetracycline and perform numerical analysis to determine isolate relatedness. METHODS AND RESULTS: Disc diffusion, E-test MIC and …
openalex
David A. Alfredson, R.J. Akhurst, Victoria Korolik
2003-03-01
置信度 0.72
TetracyclineErythromycinAgar dilutionAmpicillinCampylobacter
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ABSTRACT Changing climatic conditions influence parameters associated with the growth of pathogenic Vibrio spp. in the environment and, hence, are linked to increased incidence of vibriosis. Between 1992 and 2022, a long-term increase in Vibrio spp. infections…
openalex
Kyle D. Brumfield, Moiz Usmani, Sanneri Santiago, Komalpreet Singh 等
2023-10-16
置信度 0.72
VibrioVibrio vulnificusVibrio parahaemolyticusMetagenomicsBiology
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The progression of organ-confined prostate cancer to metastatic cancer is inevitably fatal. Consequently, identification of structural changes in the genome and associated transcriptional responses that drive this progression is critical to understanding the d…
openalex
Pamela L. Paris, Matthias D. Hofer, Giancarlo Albo, Rainer Kuefer 等
2006-12-01
置信度 0.72
Prostate cancerLymph nodeComparative genomic hybridizationBiologyCopy number analysis
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MarkerDB (https://markerdb.ca) has become a leading resource for comprehensive information on molecular biomarkers. Over the past 3 years, the database has evolved significantly, reflecting the dynamic landscape of biomarker research and increasing demands fro…
openalex
Hayley Jackson, Eponine Oler, Claudia Torres-Calzada, Ray Kruger 等
2024-10-25
置信度 0.72
BiomarkerUsabilityResource (disambiguation)Consistency (knowledge bases)Molecular biomarkers
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PURPOSE: Neighborhoods represent complex environments with unique social, cultural, physical, and economic attributes that have major impacts on disparities in health, disease, and survival. Neighborhood disadvantage is associated with shorter breast cancer re…
openalex
Neha Goel, Alexandra Hernández, Steve W. Cole
2024-08-23
置信度 0.72
Social determinants of healthPsychosocialHealth equitySocial epidemiologyDisease
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Methods for the direct detection of copy number variation (CNV) genome-wide have become effective instruments for identifying genetic risk factors for disease. The application of next-generation sequencing platforms to genetic studies promises to improve sensi…
openalex
Seungtai Yoon, Zhenyu Xuan, Vladimir Makarov, Kenny Ye 等
2009-08-05
置信度 0.72
IndelCopy-number variationBiologyGenomeGenetics
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The advances made in genome technology have resulted in significant amounts of genomic data being generated at an increasing speed. As genomic data contain various privacy-sensitive information, security schemes that protect confidentiality and control access …
openalex
Young-Hoon Park, Yejin Kim, Junho Shim
2021-12-03
置信度 0.72
Differential privacyData sharingComputer scienceInformation privacyBlockchain
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Introduction: In recent years, artificial intelligence (AI) tools have become widely studied for thyroid ultrasonography (USG) classification. The real-world applicability of these developed tools as pre-operative diagnostic aids is limited due to model overfi…
openalex
Karishma Jassal, Melissa Edwards, Afsaneh Koohestani, Wendy A. Brown 等
2025-05-05
置信度 0.72
IndeterminateThyroid nodulesGenomicsMeta-analysisMedicine
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Advances in DNA sequencing provide the potential for clinical assays that are timely and affordable and use small amounts of clinical material. The hypothesis has therefore been raised that marked improvements in patient outcomes will result when DNA diagnosti…
openalex
Adel Tabchy, X. Cynthia, Ron Bose, Matthew J. Ellis
2013-12-01
置信度 0.72
DruggabilityGenomicsClinical trialCancerBreast cancer
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Polyploid research has traditionally distinguished between autopolyploids and allopolyploids on the basis of evolutionary origins, modes of inheritance, or chromosomal pairing behavior during meiosis. It has long been recognized, however, that a binary classif…
openalex
Alex D. Twyford, Justin L. Conover, Jeff J. Doyle, Annaliese S. Mason 等
2025-11-01
置信度 0.72
PolyploidBiologyEvolutionary biologyPerspective (graphical)Ploidy
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New and more transmissible variants of SARS-CoV-2 have arisen multiple times over the course of the pandemic. Rapidly identifying mutations that affect transmission could improve our understanding of viral biology and highlight new variants that warrant furthe…
openalex
Brian Lee, Ahmed Abdul Quadeer, Muhammad Saqib Sohail, Elizabeth Finney 等
2025-01-07
置信度 0.72
Transmission (telecommunications)BiologyGeneticsMutationComputational biology
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The current classification of diffuse low-grade gliomas is based mainly on histopathological criteria, which cannot accurately predict the highly variable clinical course observed in patients with such tumors. In an attempt to increase pathogenetic understandi…
openalex
Hanne‐Sofie S. Dahlback, Ludmila Gorunova, Petter Brandal, David Scheie 等
2011-03-15
置信度 0.72
Comparative genomic hybridizationKaryotypeBiologyGliomaPathology
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We introduce the 12th version of the Molecular Evolutionary Genetics Analysis (MEGA12) software. This latest version brings many significant improvements by reducing the computational time needed for selecting optimal substitution models and conducting bootstr…
openalex
Sudhir Kumar, Glen Stecher, Michael Suleski, Maxwell Sanderford 等
2024-12-01
置信度 0.72
BiologyAdaptive evolutionEvolutionary biologyMolecular evolutionComputational biology
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In the last few years microsatellites have become one of the most popular molecular markers used with applications in many different fields. High polymorphism and the relative ease of scoring represent the two major features that make microsatellites of large …
openalex
Lorenzo Zane, Luca Bargelloni, Tomaso Patarnello
2002-01-01
置信度 0.72
MicrosatelliteBiologyIsolation (microbiology)Computational biologyEvolutionary biology
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MSSP proteins have been identified by their binding to an upstream element of c-myc. Independently, two different approaches yielded two cDNA clones highly homologous to the MSSP cDNAs, suggesting an involvement of MSSP in the regulation of the cell cycle (scr…
openalex
Christian Haigermoser
1996-10-01
置信度 0.72
BiologyGeneGeneticsPromoterExon
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Abstract Background Meningiomas are the most common primary central nervous system (CNS) tumor in adults and CNS World Health Organization grade 2 (atypical) meningiomas show an intermediate risk of recurrence/progression. Molecular parameters are needed to be…
openalex
Rachael A. Vaubel, Rahul Kumar, Taylor M. Weiskittel, Sarah M. Jenkins 等
2023-01-01
置信度 0.72
ResectionMeningiomaMedicineBiologyGenetics
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Identifying adaptive loci can provide insight into the mechanisms underlying local adaptation. Genotype-environment association (GEA) methods, which identify these loci based on correlations between genetic and environmental data, are particularly promising. U…
openalex
Brenna R. Forester, Jesse R. Lasky, Helene H. Wagner, Dean L. Urban
2018-04-09
置信度 0.72
UnivariateBiologyMultivariate statisticsSelection (genetic algorithm)Local adaptation
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Onchocerciasis (river blindness) is a neglected tropical disease that has been successfully targeted by mass drug treatment programs in the Americas and small parts of Africa. Achieving the long-term goal of elimination of onchocerciasis, however, requires add…
openalex
Sasisekhar Bennuru, James A. Cotton, José M. C. Ribeiro, Alexandra Grote 等
2016-11-24
置信度 0.72
Onchocerca volvulusWolbachiaParasite hostingProteomeTranscriptome
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BACKGROUND: Because of the growing number of actionable biomarkers in non-small cell lung cancer (NSCLC), sufficient tissue availability for testing is becoming a greater challenge. Liquid biopsy offers a potential solution by complementing standard tissue-bas…
openalex
Sehhoon Park, Steve Olsen, Bo Mi Ku, Min‐Sang Lee 等
2021-04-07
置信度 0.72
ConcordanceMedicineLung cancerDNA sequencingPathology
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The publication of the American Cancer Society’s “Cancer Treatment and Survivorship Statistics, 2025” report affirms that the number of people living in the United States with a history of cancer is rising because of advances in detection and treatment that ha…
openalex
Lidia Schapira, Christine Duffy
2025-05-30
置信度 0.72
MedicineSurvivorship curveCancer survivorshipCancerCancer treatment
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Plant and animal genomics is a broad area of research with respect to the biological issues covered because it continues to deal with the structure and function of genetic material underpinning all organisms. This mini-review utilizes the plenary lectures from…
openalex
R. Appels, Johan Nyström, Hollie Webster, Gabriel Keeble‐Gagnère
2015-03-01
置信度 0.72
GenomicsBiologyUnderpinningGenomeComputational biology
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openalex
Daisy Flamez, I. Roland, Alix Berton, Burak Kutlu 等
2010-04-08
置信度 0.72
Beta cellBiologyPancreatic isletsPancreasCell biology
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ER/PR+HER2- breast tumours are the most predominant subtype of breast cancer worldwide, including India. Unlike TNBCs, these tumours can be treated with anti-estrogens or aromatase inhibitors. Despite the success of endocrine therapy, a fraction of patients wi…
openalex
Arnab Ghosh, Rohan Chaubal, Chitrarpita Das, Pallavi Parab 等
2025-02-10
置信度 0.72
Breast cancerGenome instabilityEndocrine systemOncologyInternal medicine
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openalex
Iruka N. Okeke, John Wain
2008-08-19
置信度 0.72
BiologyComputational biologyInfectious disease (medical specialty)VirologyGenetics
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Dollo's law of irreversibility argues that evolution cannot revert to earlier states. It has remained controversial ever since its inception in the 19th century. Enabled by advances in phylogenomics and functional genomics, recent studies show that there are v…
openalex
Kathryn R. Elmer, Jean Clobert
2024-10-23
置信度 0.72
LawPolitical science
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On December 4, 2025, the American Association for Cancer Research (AACR) released its inaugural AACR Pediatric Cancer Progress Report, which highlights the remarkable scientific and clinical advances transforming outcomes for children (ages 0-14) and adolescen…
openalex
Kristin Primm, Elizabeth Blackman, Brett M. Sansbury, Sayyed Kaleem Zaidi 等
2026-02-04
置信度 0.72
MedicinePediatric cancerCancerMEDLINEPediatric research
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We now have a large and growing number of sequenced genomes. It is widely understood that this presents research opportunities and promises to change the way biology advances, but the magnitude and nature of the opportunities is, for the most part, poorly unde…
openalex
Ross Overbeek
2000-01-01
置信度 0.72
Data scienceComputer scienceField (mathematics)GenomicsFace (sociological concept)
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Mitogen-activated protein kinase/extracellular signal-regulated protein kinase (MAPK/ERK) is a key molecule in intracellular signal transducing pathways that transport extracellular stimuli from cell surface to nuclei. MAPK/ERK has been revealed to be involved…
openalex
Yoshiki Ito, Yutaka Sasaki, Masayoshi Horimoto, Shigeo Wada 等
1998-04-01
置信度 0.72
MAPK/ERK pathwayKinaseCancer researchProtein kinase ACyclin D1
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Bacterial epigenetic modifications play key roles in cellular processes such as stress responses, DNA replication, segregation, antimicrobial resistance, etc. In recent years, emerging new sequencing technologies, including single-molecule real-time (SMRT) seq…
openalex
Liqiong Liu, Yizhou Zhang, Dongxu Jiang, Shiming Du 等
2018-06-07
置信度 0.72
EpigeneticsComputational biologyProfiling (computer programming)BiologyGenetics
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ABSTRACT The field of population genomics has grown rapidly in response to the recent advent of affordable, large-scale sequencing technologies. As opposed to the situation during the majority of the 20th century, in which the development of theoretical and st…
openalex
Parul Johri, Charles F. Aquadro, Mark Beaumont, Brian Charlesworth 等
2021-11-02
置信度 0.72
InferenceData scienceScrutinyPopulationStatistical inference
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Ruminococcus gnavus is a gut bacterium found in > 90% of healthy individuals, but its increased abundance is also associated with chronic inflammatory diseases, particularly Crohn's disease. Nevertheless, its global distribution and intraspecies genomic variat…
openalex
Sam Nooij, Niels Plomp, Ingrid M. J. G. Sanders, L. Schout 等
2025-01-30
置信度 0.72
MetagenomicsHost (biology)RuminococcusBiologyEnvironmental health
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The Mpox virus (MPXV), a zoonotic pathogen from the Orthopoxvirus genus, has emerged as a significant global public health concern, especially after the unprecedented outbreak in 2022. This review synthesizes the MPXV’s molecular features, focusing on its geno…
openalex
Edgar Cambaza
2025-01-16
置信度 0.72
Evasion (ethics)Immune systemGenomicsBiologyFunctional genomics
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ABSTRACT Genomics is set to transform medicine and our understanding of life in fundamental ways. But the growth in genomics data has been overwhelming - far outpacing Moore’s Law. The advent of third generation sequencing technologies is providing new insight…
openalex
Yatish Turakhia, Kevin Jie Zheng, Gill Bejerano, William J. Dally
2017-01-15
置信度 0.72
SpeedupComputer scienceGenomicsDarwin (ADL)Hardware acceleration
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openalex
Aslihan Yavas, Kerem Özcan, Volkan Adsay, Serdar Balcı 等
2024-07-31
置信度 0.72
PathologyHematopathologyPancreasMedicineCarcinoma
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The B. safensis RGM 2450 and B. siamensis RGM 2529 strains were isolated from the rhizosphere of plants presenting resilience to abiotic and biotic stress conditions. To understand the implications of bacteria in resilience, a genomic and experimental analysis…
openalex
Fabiola Altimira, Sebastián Godoy, Matías Arias-Aravena, Bárbara Araya 等
2022-03-22
置信度 0.72
BiologyRhizosphereFusarium oxysporumInoculationBotany
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Aiming to identify more genomic loci associated with bone mineral density (BMD), we conducted a joint association analysis of 2 genome-wide association study (GWAS) by the integrative association method multi-trait analysis of GWAS (MTAG). The first one is the…
openalex
Lu Liu, Min Zhao, Zonggang Xie, Ju Liu 等
2020-04-22
置信度 0.72
Genome-wide association studyQuantitative trait locusExpression quantitative trait lociGenetic associationLocus (genetics)
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openalex
Isabelle F. Foote, Jonny P Flint, Anna E. Fürtjes, Jeremy M Lawrence 等
2025-08-01
置信度 0.72
BiologyMultivariate statisticsStructural equation modelingGenetic architectureMultivariate analysis
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Importance: West Nile virus (WNV), a mosquito-borne orthoflavivirus, represents an increasing public health threat in Europe. In July 2025, WNV lineage 2 (WNV-L2) was associated with the first autochthonous cases ever detected in the metropolitan area around P…
openalex
Raphaelle Klitting, Mathilde Gondard, Laura Pezzi, Camille Victoire Migné 等
2026-02-16
置信度 0.72
Biological dispersalWest Nile virusBiologyVirologyEpidemiology
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The 47th Annual Conference and the Golden Jubilee Year Meeting of the Environmental Mutagen Society of India (EMSI) and International Conference on Environmental and Molecular Mutagenesis: Genomic Integrity and Implication to Human Health was held at the Depar…
openalex
Bani Bandana Ganguly
2025-04-25
置信度 0.72
MutagenPolitical scienceLibrary scienceBiotechnologyBiology
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Recent advances in genomics have revolutionized plant pathogen detection and control by enabling faster and more accurate identification compared to traditional culture-based methods. Genomic tools like metagenomics and next generation sequencing (NGS) facilit…
openalex
Nkechi Gloria Ogbuji, Josephine U. Agogbua
2025-11-05
置信度 0.72
BiologyGenomicsCRISPRMetagenomicsIdentification (biology)
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openalex
Sheila A. Kitchen, Thomas H. Naragon, Adrian Brückner, Mark S. Ladinsky 等
2024-06-17
置信度 0.72
BiologyComputational biologyBiotechnologyGenetics
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Kolmogorov-Arnold networks (KANs) emerged as a promising alternative for multilayer perceptrons (MLPs) in dense fully connected networks. Multiple attempts have been made to integrate KANs into various deep learning architectures in the domains of computer vis…
openalex
Oleksandr Cherednichenko, Maria Poptsova
2025-03-01
置信度 0.72
Computer scienceGenomic medicineComputational biologyArtificial intelligenceBiology
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Abstract The International Weed Genomics Consortium is a collaborative group of researchers focused on developing genomic resources for the study of weedy plants. Weeds are attractive systems for basic and applied research due to their impacts on agricultural …
openalex
Jacob S. Montgomery, Sarah Morran, Dana R. MacGregor, J. Scott McElroy 等
2023-07-20
置信度 0.72
WeedGenomicsAgricultureWeed controlSelection (genetic algorithm)
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Abstract Reactive oxygen species (ROS) oxidize nucleotide triphosphate pools (e.g., 8-oxodGTP), which may kill cells if incorporated into DNA. Whether cancers avoid poisoning from oxidized nucleotides by preventing incorporation via the oxidized purine diphosp…
openalex
Sean G. Rudd, Helge Gad, Kumar Sanjiv, Nuno Amaral 等
2020-04-20
置信度 0.72
MitosisDNA damageBiologyDNA replicationMitotic catastrophe
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The Yellow and Yangtze river basins in China are among the world's oldest independent agricultural centers, known for the domestication of millet and rice, respectively, yet their genetic history is poorly understood. Here, we present genome-wide data from 74 …
openalex
Jianxue Xiong, Xu Yu, Guoke Chen, Liping Yang 等
2025-08-19
置信度 0.72
AgricultureMiddle EastGeographyAncient historyAgronomy
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The current paradigm of personalized medicine envisages the use of genomic data to provide predictive information on the health course of an individual with the aim of prevention and individualized care. However, substantial efforts are required to realize the…
openalex
Bram P. Prins, Liis Leitsalu, Katri Pärna, Krista Fischer 等
2021-04-29
置信度 0.72
Personalized medicinePrecision medicineGenomic medicineData scienceHealth care
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BACKGROUND: Long-term persistence of species with low genetic diversity is the focus of widespread attention in conservation biology. The snow leopard, Panthera uncia, is a big cat from high-alpine regions of Asia. However, its subspecies taxonomy, evolutionar…
openalex
Lin Yang, Hongjian Jin, Qi‐En Yang, Andrey D. Poyarkov 等
2025-04-14
置信度 0.72
BiologyHuman geneticsEvolutionary biologyGeneticsGenetic diversity
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Despite recent efforts to issue clinical guidelines outlining strategies to define the pathogenicity of genomic variants, there is currently no standardized framework for which to make these assertions. This review does not present a step-by-step methodology, …
openalex
Dean C. Pavlick, Garrett M. Frampton, Jeffrey R Ross
2024-05-30
置信度 0.72
Context (archaeology)Computational biologyPathogenicityScope (computer science)Perspective (graphical)
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// Jean-Paul De La O 1 , Jess R. Hoag 1 , Angela K. Deem 1 , Min Wang 1 , Arthur Starodynov 1 , Sameer S. Udhane 1 , Janine R. LoBello 1 , Nishitha Therala 1 , David W. Hall 1 , Gargi D. Basu 1 and Frederick L. Baehner 1 1 Exact Sciences Corporation, Madison, …
openalex
Jean-Paul De La O, Jess Hoag, Angela K. Deem, Min Wang 等
2025-07-25
置信度 0.72
MedicineSolid tumorInternal medicineProstate cancerOncology
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INTRODUCTION: Genomic profiling is used in the diagnosis, monitoring, and treatment of malignancies. Comprehensive genomic profiling (CGP) is a next-generation sequencing (NGS) approach that can test multiple genes simultaneously, potentially saving time, mone…
openalex
Jamie Partridge Grossman, Elizabeth A. Sheppard, Zhuofan Yan, Magdalene Crabbe 等
2026-02-18
置信度 0.72
MedicineCalculatorPrecision oncologyPrecision medicineClinical Practice
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BACKGROUND: Germline mutations in mismatch repair genes, mainly in hMLH1, hMSH2, and hMSH6, predispose to the hereditary non-polyposis colorectal cancer (HNPCC) syndrome. A substantial fraction of these mutations exists in genomic rearrangements of hMSH2 and h…
openalex
Jens Plaschke, J Rüschoff, H K Schackert
2003-08-01
置信度 0.72
ExonBiologyGeneticsGermlineGermline mutation
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Climate warming is threatening biodiversity by increasing temperatures beyond the optima of many ectotherms. Owing to the inherent non-linear relationship between temperature and the rate of cellular processes, such shifts towards hot temperature are predicted…
openalex
Alexandre Rêgo, Julian Baur, Camille Girard‐Tercieux, Maria de la Paz Celorio‐Mancera 等
2025-05-16
置信度 0.72
RepeatabilityAdaptation (eye)BiologyEvolutionary biologyBiological system
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The genomic imbalance caused by varying the dosage of individual chromosomes or chromosomal segments (aneuploidy) has more detrimental effects than altering the dosage of complete chromosome sets (ploidy). Previous analysis of maize (Zea mays) aneuploids revea…
openalex
Xiaowen Shi, Hua Yang, Chen Chen, Jie Hou 等
2022-05-31
置信度 0.72
microRNABiologyGene dosageGeneAneuploidy
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Coca is the natural source of cocaine as well as a sacred and medicinal plant farmed by South American Amerindians and mestizos. The coca crop comprises four closely related varieties classified into two species (Amazonian and Huánuco varieties within Erythrox…
openalex
Dawson M. White, Jen‐Pan Huang, Orlando Adolfo Jara-Muñoz, Santiago Madriñán 等
2020-09-17
置信度 0.72
DomesticationCocaBiologyAmazon rainforestAmazonian
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MOTIVATION: Large-scale genomic projects grapple with the complex challenge of reducing medium- and long-term storage space and its associated energy consumption, monetary costs, and environmental footprint. RESULTS: We present JARVIS3, an advanced tool engine…
openalex
Maria J P Sousa, Armando J. Pinho, Diogo Pratas
2024-11-28
置信度 0.72
Computer scienceData compressionCompression (physics)ComputationMemory footprint
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Streptococcosis caused by Streptococcus agalactiae and S. iniae is a significant problem that affects the success of tilapia aquaculture industries worldwide. In this critical review, we summarize the applicable practical strategies which may effectively enhan…
openalex
Pattanapon Kayansamruaj, Nguyen Dinh‐Hung, Prapansak Srisapoome, Uthairat Na‐Nakorn 等
2023-01-28
置信度 0.72
TilapiaBiologyAquacultureGenomicsBiotechnology
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Bacteriophages constitute one of the largest reservoirs of genes of unknown function in the biosphere. Even in well-characterized phages, the functions of most genes remain unknown. Experimental approaches to study phage gene fitness and function at genome sca…
openalex
Benjamin A. Adler, Muntathar Al-Shimary, Jaymin R. Patel, Emily G. Armbruster 等
2025-02-26
置信度 0.72
BiologyGeneCRISPRGenomeFunctional genomics
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Despite a century of progress in medical knowledge, many diagnostic odysseys end in disappointment, especially when the child has a developmental disorder. In cases of autism and intellectual disability, relatively few children receive a specific diagnosis, an…
openalex
Jeffrey P. Brosco
2018-07-01
置信度 0.72
DisappointmentMedical diagnosisExome sequencingIntellectual disabilityPsychology
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Koalas are an iconic, endangered, Australian marsupial. Disease, habitat destruction, and catastrophic mega-fires have reduced koalas to remnant patches of their former range. With increased likelihood of extreme weather events and ongoing habitat clearing acr…
openalex
Elspeth A. McLennan, Toby G. L. Kovacs, Luke W. Silver, Zhiliang Chen 等
2024-11-29
置信度 0.72
Phascolarctos cinereusBiologyEcologyRange (aeronautics)Habitat
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BACKGROUND AND OBJECTIVE: Genomic medicine offers an unprecedented opportunity to improve cancer outcomes through prevention, early detection and precision therapy. Health policy makers worldwide are developing strategies to embed genomic medicine in routine c…
openalex
Mackenzie Bourke, Aideen McInerney‐Leo, Julia Steinberg, Tiffany Boughtwood 等
2025-03-29
置信度 0.72
MedicinePersonalized medicineCINAHLCost effectivenessMEDLINE
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BACKGROUND: NADC30-like PRRSV was first identified in China in 2012 and had become the predominant circulating strain since 2016. Currently, the recombination patterns of NADC30-like PRRSV in China exhibit a high degree of complexity, characterized by low whol…
openalex
Siyu Zhang, Xu Hu, Zhenyang Guo, Lirun Xiang 等
2025-05-28
置信度 0.72
GenBankGeneticsBiologyPhylogenetic treeRecombination
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Recombinational DNA repair is a universal aspect of DNA metabolism and is essential for genomic integrity. It is a template-directed process that uses a second chromosomal copy (sister, daughter, or homolog) to ensure proper repair of broken chromosomes. The k…
openalex
Stephen C. Kowalczykowski
2015-11-01
置信度 0.72
BiologyMolecular geneticsGeneticsDNADNA repair
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Bacteriophage therapy, which employs bacterial viruses to selectively eliminate pathogenic bacteria, has re-emerged as a promising strategy in the face of increasing antimicrobial resistance. However, its widespread clinical implementation is constrained by co…
openalex
Narina Abdraimova, Egor Shitikov, Maria Kornienko
2026-01-04
置信度 0.72
Phage therapyBacteriophageComputational biologyGenomicsBiology
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Inflammatory bowel diseases, which include Crohn's disease and ulcerative colitis, affect several million individuals worldwide. Crohn's disease and ulcerative colitis are complex diseases that are heterogeneous at the clinical, immunological, molecular, genet…
openalex
Jason Lloyd‐Price, Cesar Arze, Ashwin N. Ananthakrishnan, Melanie Schirmer 等
2019-05-29
置信度 0.72
Inflammatory Bowel DiseasesOmicsGut floraInflammatory bowel diseaseEcosystem
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Terpenoids (isoprenoids) encompass more than 40 000 structures and form the largest class of all known plant metabolites. Some terpenoids have well-characterized physiological functions that are common to most plant species. In addition, many of the structural…
openalex
Jörg Bohlmann, Christopher I. Keeling
2008-05-01
置信度 0.72
TerpenoidContext (archaeology)Biochemical engineeringChemistryBiology
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// Sheng-Yen Huang 1 , Chung-Chun Wu 1 , Yu-Jhen Cheng 1 , Sheng-Ping Chou 1 , Yun-Jin Jiang 2 , Kuo-Chang Chu 2 , Ching-Hwa Tsai 3 , Su-Fang Lin 1 and Jen-Yang Chen 1, 3 1 National Institute of Cancer Research, National Health Research Institutes, Miaoli 3505…
openalex
Sheng‐Yen Huang, Chung-Chun Wu, Yu-Jhen Cheng, Sheng‐Ping Chou 等
2017-09-05
置信度 0.72
Nasopharyngeal carcinomaGenome instabilityMalignancyEpstein–Barr virusCancer research
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Multiple myeloma (MM) is consistently preceded by monoclonal gammopathy of undetermined significance (MGUS) and smoldering multiple myeloma (SMM). While these precursor conditions are asymptomatic, they are not entirely benign and carry a lifelong risk of prog…
openalex
Francesco Maura, P. Leif Bergsagel, Bachisio Ziccheddu, Shaji Kumar 等
2025-10-08
置信度 0.72
Multiple myelomaMalignant transformationMonoclonal gammopathy of undetermined significanceGenomicsMedicine
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openalex
Yasminka A. Jakubek, Xiaolong Ma, Adrienne M. Stilp, Fulong Yu 等
2025-01-13
置信度 0.72
BiologyGeneticsPhenotypeHaplotypeAllele
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Genomics has significantly revolutionized pathogen surveillance, particularly in epidemiological studies, the detection of drug-resistant strains, and disease control. Despite its potential, the representation of Latin American countries in the genomic catalog…
openalex
Paulina M. Mejía‐Ponce, Elsy Janeth Ramos-González, Axel Alejandro Ramos-García, Edgar E. Lara‐Ramírez 等
2023-10-13
置信度 0.72
Mycobacterium tuberculosisDrug resistanceTuberculosisBiologyGenotype
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Epstein-Barr virus (EBV) is associated with multiple types of human cancer, including lymphoid and epithelial cancers. The closest association with EBV infection is seen in undifferentiated nasopharyngeal carcinoma (NPC), which is endemic in the southern Chine…
openalex
Sai Wah Tsao, Chi Man Tsang, Kwok Wai Lo
2017-09-11
置信度 0.72
Nasopharyngeal carcinomaLytic cycleEpstein–Barr virusBiologyVirus
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Wheat plays a crucial role in ensuring food security. However, its complex genetic structure and trait variation pose significant challenges for breeding superior varieties. In this study, a genomic prediction method for wheat (WheatGP) is proposed. WheatGP is…
openalex
Chunying Wang, Di Zhang, Yuexin Ma, Yonghao Zhao 等
2025-03-01
置信度 0.72
Computer scienceConvolutional neural networkArtificial intelligenceEpistasisRegression
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INTRODUCTION: Invasive species pose a major threat to global biodiversity and agricultural productivity, yet the genomic mechanisms driving their rapid expansion into new habitats are not fully understood. The fall armyworm, Spodoptera frugiperda, originally f…
openalex
Xuan Wang, Zhenyong Du, Yuange Duan, Shanlin Liu 等
2024-09-30
置信度 0.72
Population genomicsGenomicsBiologyPopulationComputational biology
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Many aspects of the historical relationships between populations in a species are reflected in genetic data. Inferring these relationships from genetic data, however, remains a challenging task. In this paper, we present a statistical model for inferring the p…
openalex
Joseph K. Pickrell, Jonathan K. Pritchard
2012-11-15
置信度 0.72
BiologyDomesticationEvolutionary biologyInferencePopulation
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Ease of worldwide travel provides increased opportunities for organisms not only to colonize new environments but also to encounter related but diverged populations. Such events of reconnection and secondary contact of previously isolated populations are widel…
openalex
Nicolas Alcala, Jeffrey D. Jensen, Amalio Telenti, Séverine Vuilleumier
2015-11-10
置信度 0.72
Coalescent theoryBiologyPopulationEvolutionary biologyDemographic history
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BACKGROUND: In an early-phase study involving patients with advanced non-small-cell lung cancer (NSCLC), the response rate was better with nivolumab plus ipilimumab than with nivolumab monotherapy, particularly among patients with tumors that expressed program…
openalex
Matthew D. Hellmann, Luis Paz‐Ares, Reyes Bernabe Caro, Bogdan Żurawski 等
2019-09-28
置信度 0.72
NivolumabIpilimumabMedicineLung cancerOncology
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BACKGROUND: Sex is a major source of diversity among patients and a sex-informed approach is becoming a new paradigm in precision medicine. We aimed to describe sex diversity in myelodysplastic syndromes in terms of disease genotype, phenotype, and clinical ou…
openalex
Giulia Maggioni, Matteo Bersanelli, Erica Travaglino, Ana Alfonso Piérola 等
2022-11-25
置信度 0.72
MedicineMyelodysplastic syndromesCohortObservational studyPopulation
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Abstract Between 8 March and 6 June 2025, 365 highly pathogenic avian influenza (HPAI) A(H5) virus detections were reported in domestic (167) and wild (198) birds across 24 countries in Europe. HPAI A(H5N1) virus detections were predominant and mainly located …
openalex
European Food Safety Authority, Leonidas Alexakis, Hubert Buczkowski, Mariette Ducatez 等
2025-07-01
置信度 0.72
Influenza A virus subtype H5N1WaterfowlVeterinary medicineHighly pathogenicInfluenza A virus
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Background and Aims: Crohn's disease [CD] is a chronic inflammatory disease with unpredictable behaviour. More than half of CD patients eventually develop complications such as stenosis, for which they then require endoscopic dilatation or surgery, as no anti-…
openalex
Marijn C. Visschedijk, Lieke M. Spekhorst, Shih‐Chin Cheng, Ellen S. van Loo 等
2018-01-16
置信度 0.72
WWOXSingle-nucleotide polymorphismSNPCrohn's diseaseAllele
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Several new automated methods have recently become available for high-throughput DNA extraction, including the Maxwell 16 System (Promega UK, Southampton, UK). The purpose of this report is to compare automated with manual DNA extraction methods, and invasive …
openalex
Cathriona Foley, Cliona O’Farrelly, Kieran G. Meade
2011-05-25
置信度 0.72
DNA extractionSemenBuffy coatExtraction (chemistry)DNA
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Antibiotic-resistant Escherichia coli (E. coli) is a major contributor to the global burden of antimicrobial resistance (AMR). While the One Health concept emphasizes the connection of human, animal, and environmental health, genome-resolved and quantitatively…
openalex
Xiaoqing Xu, Yunqi Lin, Yu Deng, Lei Liu 等
2025-08-08
置信度 0.72
BiologyAntibiotic resistancePlasmidEscherichia coliGenome
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The Belgian Approach for Local Laboratory Extensive Tumor Testing (BALLETT) study assessed the feasibility of using comprehensive genomic profiling (CGP) in clinical decision-making for patients with advanced cancers. This multi-center study enrolled 872 patie…
openalex
Pieter‐Jan Volders, Philippe Aftimos, Franceska Dedeurwaerdere, Geert A. Martens 等
2025-03-10
置信度 0.72
MedicineStandardizationOncologyProfiling (computer programming)Turnaround time
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Angiosarcoma is a cancer that develops in blood or lymphatic vessels that presents a significant clinical challenge due to its rarity and aggressive features. Clinical outcomes have not improved in decades, highlighting a need for innovative therapeutic strate…
openalex
Annaleigh Benton, Bozhi Liu, Lauren E. Gartenhaus, Jason A. Hanna
2024-10-05
置信度 0.72
AngiosarcomaDiseaseComputational biologyBiologyMedicine
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Trichophyton indotineae is an emerging pathogenic fungus of growing concern due to its drug resistance and therapeutic challenges posing to dermatophytosis [1, 2]. Initially classified as T. mentag...
openalex
Wenting Xie, Guanzhao Liang, Xue Kong, Clement K. M. Tsui 等
2025-04-28
置信度 0.72
EpidemiologyChinaBiologyAntifungalResistance (ecology)
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Ongoing discoveries in cancer genomics and epigenomics have revolutionized clinical oncology and precision health care. This knowledge provides unprecedented insights into tumor biology and heterogeneity within a single tumor, among primary and metastatic lesi…
openalex
Eva Serrão, Maximiliano Klug, Brian Moloney, Aaditeya Jhaveri 等
2023-11-01
置信度 0.72
RadiogenomicsMedicineGenomicsPrecision medicineEpigenomics
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HIV incidence in eastern and southern Africa has historically been concentrated among girls and women aged 15-24 years. As new cases decline with HIV interventions, population-level infection dynamics may shift by age and gender. Here, we integrated population…
openalex
Mélodie Monod, Andrea Brizzi, Ronald M. Galiwango, Robert Ssekubugu 等
2023-12-05
置信度 0.72
Incidence (geometry)Transmission (telecommunications)DemographyMedicinePopulation
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1,25-Dihydroxyvitamin D3 plays a major role in intestinal calcium transport. To determine what phenotypic abnormalities observed in vitamin D receptor (VDR)-ablated mice are secondary to impaired intestinal calcium absorption rather than receptor deficiency, m…
openalex
Yan Chun Li, Michael Amling, Alison E. Pirro, Matthias Priemel 等
1998-10-01
置信度 0.72
Calcitriol receptorEndocrinologyInternal medicineOsteomalaciaRickets
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BACKGROUND: Previously, we showed by subtractive hybridization in a swine model of ischemia/reperfusion that an upregulation of genes participating in mechanisms of cell survival is a potential genomic mechanism to tilt the balance from necrosis to functional …
openalex
C. Depre, Lu Wang, J TOMLINSON, Vinciane Gaussin 等
2003-04-01
置信度 0.72
Suppression subtractive hybridizationMyocyteVentricleEndocardiumBiology
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The ubiquitously expressed transcription factor TFII-I exerts both positive and negative effects on transcription. Using biotinylation tagging technology and high-throughput sequencing, we determined sites of chromatin interactions for TFII-I in the human eryt…
openalex
Alex Xiu‐Cheng Fan, Giorgio L. Papadopoulos, Mir Ahamed Hossain, I‐Ju Lin 等
2014-05-29
置信度 0.72
BiologyTranscription factorTranscription (linguistics)Molecular biologyATF3
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Understanding the effects of past climatic fluctuations on the distribution and population-size dynamics of cold-adapted species is essential for predicting their responses to ongoing global climate change. In spite of the heterogeneity of cold-adapted species…
openalex
Spyros Theodoridis, Christophe F. Randin, Péter Szövényi, Florian C. Boucher 等
2016-12-14
置信度 0.72
InterglacialBiologyClimate changeEcologyPopulation
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The North Pontic Region was the meeting point of the farmers of Old Europe and the foragers and pastoralists of the Eurasian steppe1,2, and the source of migrations deep into Europe3–5. Here we report genome-wide data from 81 prehistoric North Pontic individua…
openalex
Alexey G. Nikitin, Iosif Lazaridis, Nick Patterson, Світлана Іванова 等
2025-02-05
置信度 0.72
Bronze AgeBronzeArchaeologyAncient historyGeography
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This study investigated plant growth-promoting (PGP) mechanisms in Priestia aryabhattai VMYP6 and Paenibacillus sp. VMY10, isolated from tomato roots. Their genomes were initially assessed in silico through various approaches, and these observations were then …
openalex
Carolina Almirón, Tomás Denis Petitti, María Agustina Ponso, Ana María Romero 等
2025-01-28
置信度 0.72
RhizosphereBiologyPaenibacillusBotanyPlant growth
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PURPOSE: Early intervention for high-risk smoldering multiple myeloma (HR-SMM) achieves deep and prolonged responses. It is unclear if beneficial outcomes are due to the treatment of less complex, susceptible disease or inaccuracy in clinical definition of cas…
openalex
Dickran Kazandjian, Benjamin Diamond, Marios Papadimitriou, Elizabeth Hill 等
2024-04-23
置信度 0.72
Multiple myelomaProfiling (computer programming)BiologyMedicineComputational biology
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BACKGROUND: Multimodal AI integration across genomics, radiomics, and pathomics is rapidly evolving in oncology, but evidence remains heterogeneous and unevenly distributed across modalities. OBJECTIVE: To map empirical studies integrating two or more -omic mo…
openalex
Selma Mtoor, Niki Rashidian, Nouredin Messaoudi, Vincent Grasso 等
2026-01-20
置信度 0.72
WorkflowProcess managementComputer scienceKnowledge managementSystems engineering
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Genomic selection (GS) is commonly used in livestock and increasingly in plant breeding. Relying on phenotypes and genotypes of a reference population, GS allows performance prediction for young individuals having only genotypes. This is expected to achieve fa…
openalex
Sonia E Eynard, Pascal Croiseau, Dénis Laloë, Sébastien Fritz 等
2017-11-14
置信度 0.72
PopulationGenetic diversitySelection (genetic algorithm)Genetic gainTrait
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openalex
Sirpa Kivirikko, Sirpa Kehua Li, Angela M. Christiano, Jouni Uitto
1996-06-01
置信度 0.72
Anchoring fibrilsExonBiologyGeneIntron
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The phylogenetic relationship of the now fully sequenced species Drosophila erecta and D. yakuba with respect to the D. melanogaster species complex has been a subject of controversy. All three possible groupings of the species have been reported in the past, …
openalex
Daniel A. Pollard, Venky N. Iyer, Alan M Moses, Michael B. Eisen
2006-10-25
置信度 0.72
Coalescent theoryBiologyPhylogenetic treeLineage (genetic)Evolutionary biology
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SUMMARY Enterococcus faecalis is a significant resident of the gastrointestinal tract of most animals, including humans. Although generally non-pathogenic in healthy hosts, this microbe is adept at the exploitation of compromises in host immune functions, resu…
openalex
Julia L. E. Willett, Gary M. Dunny
2024-12-23
置信度 0.72
BiologyEnterococcus faecalisOrganismModel organismGenomics
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Meningioma is the most common type of primary brain tumor. Surgical resection followed by surveillance is the first-line treatment for the majority of symptomatic meningiomas; however, recent advances in molecular sequencing, DNA methylation, proteomics, and s…
openalex
Annie L. Hsieh, Wenya Linda Bi, Vijaya Ramesh, Priscilla K. Brastianos 等
2024-05-16
置信度 0.72
MedicineMeningiomaGenomicsDNA methylationDNA sequencing
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BACKGROUND: Segmental progeroid syndromes are a heterogeneous group of rare and often severe genetic disorders that have been studied since the twentieth century. These progeroid syndromes are defined as segmental because only some of the features observed dur…
openalex
Maude Grelet, Véronique Blanck, Sabine Sigaudy, Nicole Philip 等
2019-12-01
置信度 0.72
Human geneticsPremature agingGeneGeneticsMedicine
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Tandemly repeated non-coding sequences, widely known as satellite DNAs (satDNAs), are extremely diverse and highly variable components of eukaryotic genomes. In recent years, advances in high-throughput sequencing and new bioinformatics platforms have enabled …
openalex
Manuel A. Garrido-Ramos, Miroslav Plohl, Eva Šatović
2025-11-22
置信度 0.72
HeterochromatinTandem repeatBiologyComputational biologySatellite DNA
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Genomic sequencing of reemerging highly pathogenic avian influenza A(H5N1) virus detected in Argentina in February 2025 revealed novel triple-reassortant viruses containing gene segments from Eurasian H5N1 and low pathogenicity viruses from South and North Ame…
openalex
Ralph Eric Thijl Vanstreels, Martha I. Nelson, Carolina Artuso, Vanina Daniela Marchione 等
2025-12-01
置信度 0.72
Influenza A virus subtype H5N1Highly pathogenicBiologyCladeVirology
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Consumer interest in genetic and genomic testing is growing rapidly, with more than 26 million Americans having purchased direct-to-consumer genetic testing services. Capitalizing on the increasing comfort of consumers with genetic testing outside the clinical…
openalex
Kunal Sanghavi, Betty Cohn, Anya E. R. Prince, W Feero 等
2022-01-20
置信度 0.72
Genetic testingAppealBusinessCorporate governanceMarketing
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Whole-genome sequencing of bacterial pathogens is used by public health agencies to link cases of food poisoning caused by the same source of contamination. The vast majority of these appear to be sporadic cases associated with small contamination episodes and…
openalex
David J. Lipman, Joshua L. Cherry, Strain Errol, Richa Agarwala 等
2024-11-05
置信度 0.72
SalmonellaCampylobacterContaminationBiologyContaminated food
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The clinical outcomes and genomic features of E2A-PBX1 (TCF3-PBX1)-positive B-cell acute lymphoblastic leukemia (B-ALL) patients remain unclear. A total of 137 patients carrying E2A-PBX1 among 3164 B-ALL patients between 2009 and 2019 were retrospectively anal…
openalex
Biqi Zhou, Xinran Chu, Hong Tian, Tianhui Liu 等
2021-08-18
置信度 0.72
Lymphoblastic LeukemiaMedicineRetrospective cohort studyOncologyInternal medicine
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: Predicting how genetic variation affects phenotypic outcomes at the organismal, cellular, and molecular levels requires deciphering the cis-regulatory code, the sequence rules by which non-coding regions regulate genes. In this perspective, we discuss recent…
openalex
Julia Zeitlinger, Sushmita Roy, Ferhat Ay, Anthony Mathelier 等
2024-12-26
置信度 0.72
GenomicsBenchmarkingComputational biologyRegulatory sequenceGene regulatory network
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Abstract In the age of long read sequencing, genomics researchers now have access to accurate repetitive DNA sequence (including satellites) that, due to the limitations of short read-sequencing, could previously be observed only as unmappable fragments. Tools…
openalex
Daniel R. Olson, Travis J. Wheeler
2024-01-01
置信度 0.72
Tandem repeatSequence (biology)Computational biologyVariable number tandem repeatGenetics
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This paper introduces BioGPT, a generative transformer-based framework designed to advance personalized genomic medicine and rare disease diagnosis. Unlike conventional models that process either genomic sequences or clinical narratives in isolation, BioGPT em…
openalex
Ghada Al-Kateb, Emine Cengiz, Murat Gök
2025-07-11
置信度 0.72
Generative grammarPersonalized medicineTransformerGenomic medicineComputer science
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Landscape genomic approaches for detecting genotype-environment associations (GEA), isolation by distance (IBD) and isolation by environment (IBE) have seen a dramatic increase in use, but there have been few thorough analyses of the influence of sampling stra…
openalex
Anusha P. Bishop, Drew E. Terasaki Hart, Ian Wang
2024-12-17
置信度 0.72
Sampling (signal processing)BiologyTransectIsolation by distanceGenomics
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The scientific community has long benefited from the opportunities provided by data reuse. Recognizing the need to identify the challenges and bottlenecks to reuse in the agricultural research community and propose solutions for them, the data reuse working gr…
openalex
Alenka Hafner, Victoria L. DeLeo, Cecilia Deng, Christine G. Elsik 等
2025-01-01
置信度 0.72
GenomicsData scienceReuseAgricultureComputer science
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openalex
Stephen Dalton
1992-05-01
置信度 0.72
BiologyCyclin-dependent kinase 1E2FGeneTranscription (linguistics)
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Abstract Anelloviruses are a group of small, circular, single-stranded DNA viruses that are found ubiquitously across mammalian hosts. Here, we explored a large number of publicly available human microbiome datasets and retrieved a total of 829 anellovirus gen…
openalex
Sejal Modha, Joseph Hughes, Richard Orton, Spyros Lytras
2025-01-01
置信度 0.72
BiologyGenomeRecombinationHomologous recombinationGenetics
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BACKGROUND: The rapid expansion of human genomic data demands foundation models that manage ultra-long sequences and capture population diversity, limitations common in existing models that lack human-specific representation, and clinical inference efficiency.…
openalex
Anqi Lin, Bin Xie, Ye Cheng, Cheng Wang 等
2025-01-01
置信度 0.72
BlueprintDocumentationFoundation (evidence)Benchmark (surveying)Computer science
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Precision neurosurgery is rapidly evolving as a medical specialty by merging genomic medicine, multi-omics technologies, and artificial intelligence (AI) technology, while at the same time, society is shifting away from the traditional, anatomic model of care …
openalex
Matei Șerban, Corneliu Toader, Răzvan-Adrian Covache-Busuioc
2025-07-30
置信度 0.72
Precision medicineOmicsGenomicsPersonalized medicineComputational biology
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Background Aspergillus fumigatus is the main cause of invasive aspergillosis and triazole antifungals are the primary treatment option. The effectiveness of triazole therapy is hampered by the emergence of resistance, mainly caused by mutations in the cyp51A g…
openalex
Yinggai Song, Jochem B. Buil, Johanna Rhodes, Jan Zoll 等
2025-07-15
置信度 0.72
Aspergillus fumigatusGenotypeBiologyMicrobiologyTriazole
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, the underlying processes and rates of spontaneous CA formation in human cells are underexplored. Here we introduce machine-learning-assisted genomics and imaging convergence (MAGIC)-an autonomously operated platform that integrates live-cell imaging of micro…
openalex
Marco Raffaele Cosenza, Alice Gaiatto, Büşra Erarslan Uysal, Álvaro Andrades 等
2025-10-29
置信度 0.72
Dicentric chromosomeBiologyGenome instabilityChromosomeSomatic cell
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Over three years' pandemic of 2019 novel coronavirus disease (COVID-19), multiple variants and novel subvariants have emerged successively, outcompeted earlier variants and become predominant. The sequential emergence of variants reflects the evolutionary proc…
openalex
Letian Fang, Jie Xu, Yue Zhao, Junyan Fan 等
2023-07-25
置信度 0.72
BiologyAntigenicityGeneticsVirologyMutation
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RNA-binding proteins (RBPs) form a large and diverse class of factors, many members of which are overexpressed in hematologic malignancies. RBPs participate in various processes of messenger RNA (mRNA) metabolism and prevent harmful DNA:RNA hybrids or R-loops.…
openalex
Shiva Bamezai, Alex Jose Pulikkottil, Tribhuwan Yadav, Vegi M. Naidu 等
2023-05-05
置信度 0.72
BiologyMyeloid leukemiaHaematopoiesisStem cellProgenitor cell
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We identified and cloned a mouse double homeobox gene (Duxbl), which encodes two homeodomains. Duxbl gene, a tandem triplicate produces two major transcripts, Duxbl and Duxbl-s. The amino acid sequences of Duxbl homeodomains are most similar to those of human …
openalex
Shey‐Lin Wu, Ming‐Shiun Tsai, Swee‐Hee Wong, Hsiu‐Mei Hsieh‐Li 等
2010-01-08
置信度 0.72
BiologyMyogenesisHomeoboxMyogeninC2C12
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Human metapneumovirus (hMPV) is a significant respiratory pathogen, primarily impacting young, elderly, and immunocompromised populations. While the clinical presentations are similar to those of other respiratory viruses such as respiratory syncytial virus (R…
openalex
Keyhan Mohammadi, Samireh Faramarzi, Shakila Yaribash, Zahra Valizadeh 等
2025-05-20
置信度 0.72
Human metapneumovirusMetapneumovirusVirologyBiologyRespiratory system
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Demand for genomic testing is increasing across medicine as it paves the way for earlier diagnoses and targeted management of patients with rare diseases. The diagnostic utility of genomic testing has been clearly established, with evidence demonstrating value…
openalex
Michael P. Mackley, Emma Weisz, Robin Z. Hayeems, Clara Gaff 等
2025-01-03
置信度 0.72
GeneticistGenomic medicineHuman geneticsMainstreamingGenetics
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Autism spectrum disorder (ASD) is a complex neurodevelopmental condition with a strong genetic component in which rare variants contribute significantly to risk. We performed whole genome and/or exome sequencing (WGS and WES) and SNP-array analysis to identify…
openalex
Marta Viggiano, Fabiola Ceroni, Paola Visconti, Annio Posar 等
2024-03-22
置信度 0.72
GeneticsCopy-number variationPenetranceBiologyCandidate gene
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openalex
Sahn-Ho Kim, Patrick Kaminker, Judith Campisi
1999-12-01
置信度 0.72
TelomereBiologyShelterinTelomeraseTelomere-binding protein
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openalex
Dalila Pinto, Alistair T. Pagnamenta, Lambertus Klei, Richard Anney 等
2010-06-08
置信度 0.72
Copy-number variationAutismGeneticsBiologyGenome
-
Genomics has revolutionized epidemiology and disease surveillance by providing powerful tools for identifying, tracking, and analyzing pathogens at the molecular level. This exploratory analysis examines the integration of genomic with traditional epidemiologi…
openalex
Shraddha Tiwari, Thakur Dhakal, Baek-Jun Kim, Gab‐Sue Jang 等
2025-12-01
置信度 0.72
GenomicsOutbreakDiseaseInfectious disease (medical specialty)Epidemiology
-
Influenza, a human disease caused by viruses in the Orthomyxoviridae family, is estimated to infect 5% -10 % of adults and 20% -30 % of children annually. Influenza A (IAV) and Influenza B (IBV) viruses accumulate amino acid substitutions (AAS) in the hemagglu…
openalex
Madeline Yunker, David A. Villafuerte, Amary Fall, Julie M. Norton 等
2024-07-26
置信度 0.72
GerontologyBiologyMedicine
-
Terpenoids, which are essential pharmaceutical compounds, encounter significant production challenges due to their low yields in native plants and associated ecological concerns. This review summarizes recent advances in metabolic engineering strategies applie…
openalex
Changfeng Guo, Si Xu, Xiaoyun Guo
2025-09-05
置信度 0.72
Metabolic engineeringTerpenoidBiosynthesisBiotechnologyBiology
-
Recent evidence revealed extra skeleton activity of vitamin D, including prevention from cardiometabolic diseases and cancer development as well as anti-inflammatory properties. It is worth noting that vitamin D deficiency is very common and may be associated …
openalex
Izabela Szymczak-Pajor, Agnieszka Śliwińska
2019-04-06
置信度 0.72
Insulin resistanceMedicinevitamin D deficiencyInsulinEndocrinology
-
Aroideae is an important subfamily of the Araceae family and contains many plants with medicinal and edible value. It is difficult to identify and classify Aroideae species accurately on the basis of morphology alone because of their polymorphic phenotypic tra…
openalex
Xinbi Jia, Jiaqi Wei, Yuewen Chen, Chenghong Zeng 等
2025-02-05
置信度 0.72
Variation (astronomy)GenomeEvolutionary biologyBiologyChloroplast
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Hemizygous genes, which are present on only one of the two homologous chromosomes of diploid organisms, have been mainly studied in the context of sex chromosomes and sex-linked genes. However, these genes can also occur on the autosomes of diploid plants due …
openalex
Yanling Peng, Yiwen Wang, Yuting Liu, Xinyue Fang 等
2025-02-07
置信度 0.72
BiologyGeneticsGeneGenomeAutosome
-
Developments in genomics and phenomics have provided valuable tools for use in cultivar development. Genomic prediction (GP) has been used in commercial soybean [Glycine max L. (Merr.)] breeding programs to predict grain yield and seed composition traits. Phen…
openalex
Liza Van der Laan, Kyle Parmley, Mojdeh Saadati, Hernan Torres Pacin 等
2025-02-19
置信度 0.72
PhenomicsBiologyBest linear unbiased predictionGrowing seasonGenome-wide association study
-
The development of new genomic techniques (NGTs) has the potential to address some future challenges related to food security, agroecology and global warming. NGTs encompass ZFN-1, ZFN-2 and ZFN-3 technologies, TALENs, Meganucleases, CRISPR-Cas, and Oligonucle…
openalex
Stephane Lemarié, Stéphan Marette
2022-07-30
置信度 0.72
Food securityAgricultureIntellectual propertyBusinessPolitical science
-
BACKGROUND: Experimental data from functional assays have a critical role in interpreting the impact of genetic variants. Assay data must be unambiguously mapped to a reference genome to make it accessible, but it is often reported relative to assay-specific s…
openalex
Jeremy A. Arbesfeld, Estelle Y. Da, James Stevenson, Kori Kuzma 等
2025-06-25
置信度 0.72
EnsemblGenomicsDECIPHERPersonal genomicsComputational biology
-
Significant gaps persist despite the progress in raising awareness of genomic diversity and including individuals of African ancestry in genomic research. African populations remain underrepresented in genomic studies despite their deep evolutionary history, d…
openalex
Oyesola Ojewunmi, Segun Fatumo
2025-04-30
置信度 0.72
BiologyPrecision medicineBiobankHealth equityGenomic medicine
-
Accurate cancer prognosis is essential for personalized clinical management, guiding treatment strategies and predicting patient survival. Conventional methods, which depend on the subjective evaluation of histopathological features, exhibit significant inter-…
openalex
Yongfei Hu, Xinyu Li, Ying Yi, Yan Huang 等
2025-03-01
置信度 0.72
Artificial intelligenceDeep learningCancerComputer scienceMultimodal therapy
-
BACKGROUND: Candida auris is a multidrug resistant, emerging agent of fungemia in humans. Its actual global distribution remains obscure as the current commercial methods of clinical diagnosis misidentify it as C. haemulonii. Here we report the first draft gen…
openalex
Sharanya Chatterjee, Shuba Varshini Alampalli, Rishi Kumar Nageshan, Sivarajan T. Chettiar 等
2015-09-07
置信度 0.72
Candida aurisBiologyFungal pathogenGenomeOpportunistic pathogen
-
The timing of the settlement of Sahul—the Pleistocene landmass formed by present-day New Guinea, Australia, and Tasmania that existed until ~9000 years ago (~9 ka)—remains highly contentious. The so-called “long chronology” posits the first main arrivals at ~6…
openalex
Francesca Gandini, Mafalda Almeida, M. George B. Foody, Nano Nagle 等
2025-11-28
置信度 0.72
Context (archaeology)PleistoceneLineage (genetic)Range (aeronautics)Evolutionary biology
-
One of the goals of population genetics is to understand how evolutionary forces shape patterns of genetic variation over time. However, because populations evolve across both time and space, most evolutionary processes also have an important spatial component…
openalex
Martin Petr, Benjamin C. Haller, Peter L. Ralph, Fernando Racimo
2023-12-15
置信度 0.72
GeographyEvolutionary biologyPopulationCartographyComputer science
-
BACKGROUND: Coalescent simulation is pivotal for understanding population evolutionary models and demographic histories, as well as for developing novel analytical methods for genetic association studies for DNA sequence data. A plethora of coalescent simulato…
openalex
Tao Yang, Hong‐Wen Deng, Tianhua Niu
2014-01-03
置信度 0.72
Coalescent theoryComputational biologyRecombinationDNA microarrayBiology
-
Genomic surveillance has been crucial in monitoring the evolution and spread of SARS-CoV-2. In Andalusia (Spain), a coordinated genomic surveillance circuit was established to systematically sequence and analyze viral genomes across the region. This initiative…
openalex
Carlos S. Casimiro‐Soriguer, María Pía Lara, Andrea Aguado, Carlos Loucera 等
2025-04-16
置信度 0.72
GenomePreparednessComputational biologyPublic health surveillanceIdentification (biology)
-
Developing climate-resilient and high-quality cotton cultivars remains an urgent challenge, as the key target traits yield, fibre properties, and stress tolerance are highly polygenic and strongly influenced by genotype–environment interactions. Recent advance…
openalex
Zahra Ghorbanzadeh, Bahman Panahi, Leila Purhang, Zhila Hossein Panahi 等
2025-10-15
置信度 0.72
IdeotypeGenomicsBiologyGenomic selectionBiotechnology
-
RepeatsDB (URL: https://repeatsdb.org) stands as a key resource for the classification and annotation of Structured Tandem Repeat Proteins (STRPs), incorporating data from both the Protein Data Bank (PDB) and AlphaFoldDB. This latest release features substanti…
openalex
Damiano Clementel, Paula Nazarena Arrías, Soroush Mozaffari, Zarifa Osmanli 等
2024-10-11
置信度 0.72
AnnotationBiologyKey (lock)Tandem repeatInterface (matter)
-
openalex
Huichuan Zhuang, Po‐Heng Lee, Zhuoying Wu, Houde Jing 等
2021-04-19
置信度 0.72
CellulosomeCellulosic ethanolBiomass (ecology)BioenergyCellulose
-
Genomic prediction for multiple environments can aid the selection of genotypes suited to specific soil and climate conditions. Methodological advances allow effective integration of phenotypic, genomic (additive, nonadditive), and large-scale environmental (e…
openalex
Michaela Jung, Carles Quesada‐Traver, Morgane Roth, María José Aranzana 等
2024-11-20
置信度 0.72
BiologyBiotechnologyComputational biology
-
Linezolid (LNZ) is a synthetic oxazolidinone antibiotic that inhibits bacterial protein synthesis through binding to ribosomal RNA, also preventing the assembly of the initiation complex during translation. It is one of the last-line therapeutic options for se…
openalex
Slavil Peykov, Boris Kirov, Tanya Strateva
2025-08-24
置信度 0.72
LinezolidAntimicrobialEnterococcusAntibiotic resistanceBiology
-
Progress is being made in schizophrenia genomics, suggesting that this complex brain disorder involves rare, moderate to high-risk mutations and the cumulative impact of small genetic effects, coupled with environmental factors. The genetic heterogeneity under…
openalex
Aiden Corvin
2011-11-08
置信度 0.72
Schizophrenia (object-oriented programming)GenomicsBiologyPerspective (graphical)Disease
-
Multiple types of high throughput genomics data create a potential opportunity to identify driver patterns in ovarian cancer, which will acquire some novel and clinical biomarkers for appropriate diagnosis and treatment to cancer patients. To identify candidat…
openalex
Xinguo Lu, Jibo Lu, Bo Liao, Xing Li 等
2017-11-17
置信度 0.72
Computational biologyMutationCandidate geneGenomicsBiology
-
The Consortium for Genomic Diversity, Ancestry, and Health in Colombia (CÓDIGO) aims to build a community of Colombian researchers in support of local capacity in genomics, bioinformatics, and precision health. Here, we present the first CÓDIGO data release an…
openalex
Leonardo Mariño‐Ramírez, Shivam Sharma, James Matthew Hamilton, T. Nguyen 等
2025-07-17
置信度 0.72
Genetic genealogyGeneticsGenomicsBiologyGenome
-
We review the hypothesized and observed effects of two of the major forms of genomic conflicts, genomic imprinting and sexual antagonism, on human health. We focus on phenotypes mediated by peptide and steroid hormones (especially oxytocin and testosterone) be…
openalex
Mikael Mökkönen, Bernard J. Crespi
2015-01-09
置信度 0.72
BiologyAntagonismTestosterone (patch)OxytocinGenetics
-
Genomic studies of endangered species have primarily focused on describing diversity patterns and resolving phylogenetic relationships, with the overarching goal of informing conservation efforts. However, few studies have investigated genomic diversity housed…
openalex
Ellie E. Armstrong, Jazlyn A. Mooney, Katherine A. Solari, Bernard Kim 等
2024-09-19
置信度 0.72
SubspeciesTigerBiologyInbreedingGenetic diversity
-
This review explores current knowledge on the environmental, oxidative, and genomic effects of sucralose (E955), an artificial sweetener widely used in food products, including those for children, and known to cross both the placental barrier and into breast m…
openalex
Volodymyr Tkach, Тетяна Морозова, Isabel Gaivão, Natasha Gomes de Miranda 等
2025-07-01
置信度 0.72
SucraloseAquatic ecosystemOxidative stressBiologyBiotechnology
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europepmc
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Rice is the staple crop for more than half of the global population, and improving grain yield, grain quality, and stress resistance remain central goals of modern rice breeding. Among current precision breeding strategies, genome editing has created new oppor…
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Plant-associated microbiomes are central to crop productivity, nutrient efficiency, and stress resilience, yet conventional microbiome manipulation strategies, largely based on microbial inoculation and agronomic management, often suffer from inconsistent fiel…
europepmc
2026
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europepmc
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The emergence of CRISPR/Cas9 technology has transformed the landscape of gene editing, allowing for precise alterations in DNA that hold great promise for research and potential therapies. However, a significant concern is the occurrence of off-target effects,…
europepmc
2026
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