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python programming language

GeneTech 知识引擎共收录 72 篇相关科研实体，横跨 15 个垂直领域。数据来自 OpenAlex、arXiv、Crossref、PubMed、Europe PMC 等公开学术源，全部可溯源到原文。

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代表性文献（按质量分排序，前 60 条）

• ChatSpatial: Schema-Enforced Agentic Orchestration for Reproducible and Cross-Platform Spatial Transcriptomics
  2026 · AI Agent 生态 · Spatial transcriptomics has transformed our ability to study tissue architecture at molecular resolution, yet analyzing these data demands navigating dozens of computational methods across incompatible Python and R ecosy…
• From Pipettes to p-Values: A Framework for Companion Statistical Reporting in Experimental Neuroscience
  2026 · 脑科学 · Statistical inference in experimental neuroscience is routinely detached from the experimental record: analytic choices are reported in prose summaries that do not expose the code, assumptions, or decision pathways that …
• Additional Material for the paper A Self-Adaptive Digital Twin Architecture for Dynamic Resource Management
  2026 · 数字孪生 · Additional Material for the paper A Self-Adaptive Digital Twin Architecture for Dynamic Resource Management The repository contains additional material for the SEAMS 2026 conference paper.The material includes: The sourc…
• Additional Material for the paper A Self-Adaptive Digital Twin Architecture for Dynamic Resource Management
  2026 · 数字孪生 · Additional Material for the paper A Self-Adaptive Digital Twin Architecture for Dynamic Resource Management The repository contains additional material for the SEAMS 2026 conference paper.The material includes: The sourc…
• Generative AI for Geospatial Analysis: Fine-Tuning ChatGPT to Convert Natural Language into Python-Based Geospatial Computations
  2025 · AI 安全与对齐 · This study investigates the potential of fine-tuned large language models (LLMs) to enhance geospatial intelligence by translating natural language queries into executable Python code. Traditional GIS workflows, while ef…
• Integration of neural networks in brain–computer interface applications: Research frontiers and trend analysis based on Python
  2025 · 仿生智能 · Brain–computer interfaces (BCIs) establish a connection between the human brain and external devices, facilitating novel forms of communication and control. Although BCIs possess significant potential, there is a need fo…
• Interpretability of Riemannian Tools Used in Brain Computer Interfaces
  2025 · 仿生智能 · Riemannian methods have established themselves as state-of-the-art approaches in Brain-Computer Interfaces (BCI) in terms of performance. However, their adoption by experimenters is often hindered by a lack of interpreta…
• IvoryOS: an interoperable web interface for orchestrating Python-based self-driving laboratories
  2025 · 仿生智能 · Self-driving laboratories (SDLs), powered by robotics, automation and artificial intelligence, accelerate scientific discoveries through autonomous experimentation. However, their adoption and transferability are limited…
• A federated learning-based privacy-preserving image processing framework for brain tumor detection from CT scans
  2025 · 仿生智能 · The detection of brain tumors is crucial in medical imaging, because accurate and early diagnosis can have a positive effect on patients. Because traditional deep learning models store all their data together, they raise…
• VARX Granger analysis: Models for neuroscience, physiology, sociology and econometrics
  2025 · 脑科学 · Complex systems, such as in brains, markets, and societies, exhibit internal dynamics influenced by external factors. Disentangling delayed external effects from internal dynamics within these systems is often difficult.…
• Using BossDB Tools to Access, Visualize, and Share Volumetric Neuroscience Data
  2025 · 脑科学 · BossDB is a free and publicly accessible archive for storing and sharing petascale neuroimaging data. Focused on FAIR (i.e., findable, accessible, interoperable, and reusable) principles, it utilizes cloud-based infrastr…
• Enhancing AI Responses in Chemistry: Integrating Text Generation, Image Creation, and Image Interpretation through Different Levels of Prompts
  2024 · AI 安全与对齐 · High Resolution Image Download MS PowerPoint Slide Generative Artificial Intelligence technologies can potentially transform education, benefiting teachers and students. This study evaluated various GAIs, including ChatG…
• MyoFInDer: An AI-Based Tool for Myotube Fusion Index Determination
  2024 · AI 安全与对齐 · The fusion index is a key indicator for quantifying the differentiation of a myoblast population, which is often calculated manually. In addition to being time-consuming, manual quantification is also error prone and sub…
• An automatic peak deconvolution code for Raman spectra of carbonaceous material and a revised geothermometer for intermediate- to moderately high-grade metamorphism
  2024 · 地外矿物 · Abstract Carbonaceous material (CM) undergoes progressive changes that reflect its thermal history. These changes are in general irreversible and provide valuable information for understanding diagenetic and metamorphic …
• WebGestalt 2024: faster gene set analysis and new support for metabolomics and multi-omics
  2024 · 生物计算 · Enrichment analysis, crucial for interpreting genomic, transcriptomic, and proteomic data, is expanding into metabolomics. Furthermore, there is a rising demand for integrated enrichment analysis that combines data from …
• Open and remotely accessible Neuroplatform for research in wetware computing
  2024 · 生物计算 · Wetware computing and organoid intelligence is an emerging research field at the intersection of electrophysiology and artificial intelligence. The core concept involves using living neurons to perform computations, simi…
• DendroPy 5: a mature Python library for phylogenetic computing
  2024 · 生物计算 · Modern bioinformatics has unlocked remarkable insight into the composition, structure, and history of the natural world around us.Arguably, the central pillar of bioinformatics is phylogenetics -the study of hereditary r…
• JCVI: A versatile toolkit for comparative genomics analysis
  2024 · 生物计算 · The life cycle of genome builds spans interlocking pillars of assembly, annotation, and comparative genomics to drive biological insights. While tools exist to address each pillar separately, there is a growing need for …
• Synthetic data generation for digital twins: enabling production systems analysis in the absence of data
  2024 · 数字孪生 · Industry increasingly focuses on data-driven digital twins of production lines, especially for planning, controlling and optimising applications. However, the lack of open data on manufacturing systems presents a challen…
• OQuPy: A Python package to efficiently simulate non-Markovian open quantum systems with process tensors
  2024 · 量子计算 · Non-Markovian dynamics arising from the strong coupling of a system to a structured environment is essential in many applications of quantum mechanics and emerging technologies. Deriving an accurate description of genera…
• QuTiP 5: The Quantum Toolbox in Python
  2024 · 量子计算 · QuTiP, the Quantum Toolbox in Python, has been at the forefront of open-source quantum software for the past 13 years. It is used as a research, teaching, and industrial tool, and has been downloaded millions of times by…
• Catalyst: a Python JIT compiler for auto-differentiable hybrid quantum programs
  2024 · 量子材料 · Catalyst is a software package for capturing Python-based hybrid quantum programs (that is, programs that contain both quantum and classical instructions), and just-in-time (JIT) compiling them down to an MLIR and LLVM r…
• The Comet Toolbox: Improving robustness in network neuroscience through multiverse analysis
  2026 · 脑科学 · In network neuroscience, a broad range of methods for estimating dynamic functional connectivity from fMRI data and subsequent analyses using network-based approaches have been introduced in recent years. However, in the…
• angellareo/workshop-neun: Introduction to Computational Neuroscience with Neun – Workshop Materials (Ecuador - Dec 2025)
  2026 · 脑科学 · This repository contains the complete materials for the workshop Introduction to Computational Neuroscience with Neun, presented at Universidad Politécnica Salesiana (Quito/Cuenca, Ecuador, December 2025). The workshop p…
• angellareo/workshop-neun: Introduction to Computational Neuroscience with Neun – Workshop Materials (Ecuador - Dec 2025)
  2026 · 脑科学 · This repository contains the complete materials for the workshop Introduction to Computational Neuroscience with Neun, presented at Universidad Politécnica Salesiana (Quito/Cuenca, Ecuador, December 2025). The workshop p…
• Dataset and simulation code for the paper "A Simulation-Based Framework for Fatigue-Aware Task Reallocation in Human-Robot Collaboration:Satistical Validation with 1000-Episode Digital Twin"
  2026 · 数字孪生 · Dataset and simulation code for the paper "A Simulation-Based Framework for Fatigue-Aware Task Reallocation in Human-Robot Collaboration:Satistical Validation with 1000-Episode Digital Twin" published in IEEE Access (202…
• Dynamax: A Python package for probabilistic state space modeling with JAX
  2025 · 脑科学 · State space models (SSMs) are fundamental tools for modeling sequential data.They are broadly used across engineering disciplines like signal processing and control theory, as well as scientific domains like neuroscience…
• decoupleR: ensemble of computational methods to infer biological activities from omics data
  2022 · 生物计算 · Summary: Many methods allow us to extract biological activities from omics data using information from prior knowledge resources, reducing the dimensionality for increased statistical power and better interpretability. H…
• HoloOcean: An Underwater Robotics Simulator
  2022 · 深海科技 · Due to the difficulty and expense of underwater field trials, a high fidelity underwater simulator is a necessity for testing and developing algorithms. To fill this need, we present HoloOcean, an open source underwater …
• Future era of techno-economic analysis: Insights from review
  2022 · 数字孪生 · Techno-economic analysis (TEA) has been considered an important tool to evaluate the economic performance of industrial processes. Recently, the application of TEA has been observed to have exponential growth due to the …
• Development of a digital twin operational platform using Python Flask
  2022 · 数字孪生 · Abstract The digital twin concept has developed as a method for extracting value from data, and is being developed as a new technique for the design and asset management of high-value engineering systems such as aircraft…
• Insights from incorporating quantum computing into drug design workflows
  2022 · 量子计算 · MOTIVATION: While many quantum computing (QC) methods promise theoretical advantages over classical counterparts, quantum hardware remains limited. Exploiting near-term QC in computer-aided drug design (CADD) thus requir…
• Biofoundry Palette: Planning-Assistant Software for Liquid Handler-Based Experimentation and Operation in the Biofoundry Workflow
  2022 · 合成生物与生物制造 · Lab automation has facilitated synthetic biology applications in an automated workflow, and biofoundry facilities have enabled automated high-throughput experiments of gene cloning and genome engineering to be conducted …
• Mining all publicly available expression data to compute dynamic microbial transcriptional regulatory networks
  2021 · 生物计算 · Abstract We are firmly in the era of biological big data. Millions of omics datasets are publicly accessible and can be employed to support scientific research or build a holistic view of an organism. Here, we introduce …
• The ANTsX ecosystem for quantitative biological and medical imaging
  2021 · 生物计算 · The Advanced Normalizations Tools ecosystem, known as ANTsX, consists of multiple open-source software libraries which house top-performing algorithms used worldwide by scientific and research communities for processing …
• Simulation-Optimization of Digital Twin
  2021 · 数字孪生 · With rapid advancements in Cyber-Physical manufacturing, the Internet of Things, Simulation software, and Machine Learning algorithms, the applicability of Industry 4.0 is gaining momentum. The demand for real-time decis…
• Evaluating Large Language Models Trained on Code
  2021 · 具身智能 · I created a basic proof of concept of LMVM (Language Model Virtual Machine), a command line toolchain that English instructions into native binaries without intermediary high-level language compilation. The command line …
• SynBiopython: an open-source software library for <i>Synthetic Biology</i>
  2021 · 合成生物与生物制造 · Abstract Advances in hardware automation in synthetic biology laboratories are not yet fully matched by those of their software counterparts. Such automated laboratories, now commonly called biofoundries, require softwar…
• ATSAS 3.0: expanded functionality and new tools for small-angle scattering data analysis
  2020 · 生物计算 · The ATSAS software suite encompasses a number of programs for the processing, visualization, analysis and modelling of small-angle scattering data, with a focus on the data measured from biological macromolecules. Here, …
• Nengo and Low-Power AI Hardware for Robust, Embedded Neurorobotics.
  2020 · 仿生智能 · In this paper we demonstrate how the Nengo neural modeling and simulation libraries enable users to quickly develop robotic perception and action neural networks for simulation on neuromorphic hardware using tools they a…
• Interactive visualization and analysis of morphological skeletons of brain vasculature networks with VessMorphoVis
  2020 · 仿生智能 · MOTIVATION: Accurate morphological models of brain vasculature are key to modeling and simulating cerebral blood flow in realistic vascular networks. This in silico approach is fundamental to revealing the principles of …
• Implementation of a Bi-Directional Digital Twin for Industry 4 Labs in Academia: A Solution Based on OPC UA
  2020 · 数字孪生 · With the increased demands of smarter manufacturing approaches around the world, the process of industrial digital transformation is being pushed in and by both industry and academia. Learning factories and testing labor…
• PyRep: Bringing V-REP to Deep Robot Learning
  2019 · 具身智能 · PyRep is a toolkit for robot learning research, built on top of the virtual robotics experimentation platform (V-REP). Through a series of modifications and additions, we have created a tailored version of V-REP built wi…
• NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks
  2018 · 仿生智能 · Motivation: From image stacks to computational models, processing digital representations of neuronal morphologies is essential to neuroscientific research. Workflows involve various techniques and tools, leading in cert…
• Riemannian geometry for EEG-based brain-computer interfaces; a primer and a review
  2017 · 仿生智能 · Despite its short history, the use of Riemannian geometry in brain-computer interface (BCI) decoding is currently attracting increasing attention, due to accumulating documentation of its simplicity, accuracy, robustness…
• The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
  2012 · 生物计算 · BACKGROUND: We present the Biological Observation Matrix (BIOM, pronounced "biome") format: a JSON-based file format for representing arbitrary observation by sample contingency tables with associated sample and observat…
• The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
  2012 · 深海科技 · BACKGROUND: We present the Biological Observation Matrix (BIOM, pronounced "biome") format: a JSON-based file format for representing arbitrary observation by sample contingency tables with associated sample and observat…
• PHENIX : a comprehensive Python-based system for macromolecular structure solution
  2010 · 生物计算 · Macromolecular X-ray crystallography is routinely applied to understand biological processes at a molecular level. However, significant time and effort are still required to solve and complete many of these structures be…
• ABC-SysBio—approximate Bayesian computation in Python with GPU support
  2010 · 生物计算 · MOTIVATION: The growing field of systems biology has driven demand for flexible tools to model and simulate biological systems. Two established problems in the modeling of biological processes are model selection and the…
• Biopython: freely available Python tools for computational molecular biology and bioinformatics
  2009 · 生物计算 · Abstract Summary: The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes modules for …
• Biopython: freely available Python tools for computational molecular biology and bioinformatics
  2009 · 生命科学 · Abstract Summary: The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes modules for …
• TinkerCell: modular CAD tool for synthetic biology
  2009 · 合成生物与生物制造 · BACKGROUND: Synthetic biology brings together concepts and techniques from engineering and biology. In this field, computer-aided design (CAD) is necessary in order to bridge the gap between computational modeling and bi…
• The Bioperl Toolkit: Perl Modules for the Life Sciences
  2002 · 生命科学 · The Bioperl project is an international open-source collaboration of biologists, bioinformaticians, and computer scientists that has evolved over the past 7 yr into the most comprehensive library of Perl modules availabl…
• miRge3.0: a comprehensive microRNA and tRF sequencing analysis pipeline
  2021 · 仿生智能 · MicroRNAs and tRFs are classes of small non-coding RNAs, known for their roles in translational regulation of genes. Advances in next-generation sequencing (NGS) have enabled high-throughput small RNA-seq studies, which …
• Expanding LUME to Support Virtual Accelerators and Digital Twins
  2026 · 数字孪生 · Virtual accelerators and digital twins are increasingly essential tools for accelerator operations, controls development and verification, and model-based optimization. However, current implementations are often tightly …
• Digital Twin Modeling of a Highly Automated Agricultural Tractor
  2026 · 数字孪生 · In efforts to increase research efficiency and availability, a digital twin of our research tractor (AMX G-trac) is created, focusing especially on the CAN communication for data reading and actuation command following t…
• MNE-LSL: Real-time framework integrated with MNE-Python for online neuroscience research through LSL-compatible devices.
  2025 · 脑科学 · Scheltienne et al., (2025). MNE-LSL: Real-time framework integrated with MNE-Python for online neuroscience research through LSL-compatible devices.. Journal of Open Source Software, 10(111), 8088, https://doi.org/10.211…
• pytransit: fast and easy exoplanet transit modelling in python
  2015 · 地外科学 · We present a fast and user friendly exoplanet transit light-curve modelling package pytransit, implementing optimized versions of the Giménez and Mandel & Agol transit models. The package offers an object-oriented python…
• MEG and EEG data analysis with MNE-Python
  2013 · 仿生智能 · Magnetoencephalography and electroencephalography (M/EEG) measure the weak electromagnetic signals generated by neuronal activity in the brain. Using these signals to characterize and locate neural activation in the brai…
• DendroPy: a Python library for phylogenetic computing
  2010 · 生物计算 · UNLABELLED: DendroPy is a cross-platform library for the Python programming language that provides for object-oriented reading, writing, simulation and manipulation of phylogenetic data, with an emphasis on phylogenetic …

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